EMAGE mouse gene expression spatial database

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EMAGE:10455

Acap1 ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 ( MGI:2388270)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_000913. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_000913_01	euxassay_000913_02	euxassay_000913_03	euxassay_000913_04

euxassay_000913_05	euxassay_000913_07	euxassay_000913_08	euxassay_000913_09	euxassay_000913_10

euxassay_000913_11	euxassay_000913_12	euxassay_000913_13	euxassay_000913_14	euxassay_000913_15

euxassay_000913_16	euxassay_000913_17	euxassay_000913_18	euxassay_000913_19	euxassay_000913_20

euxassay_000913_21	euxassay_000913_22	euxassay_000913_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10455_wholemount_strong.wlz

10455_wholemount_moderate.wlz

10455_wholemount_weak.wlz

10455_wholemount_possible.wlz

10455_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10455_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

thymus primordium

moderate

homogeneous

moderate expression: see section 10 11 12 13

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T2148
Entity Detected:	Acap1, ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 ( MGI:2388270)
Sequence:	sense strand is shown >T2148 TGGCCTCGAGCCAGATTCGGACGAGGGACTGGGAAGCCTGCACCCTGGGGCCCTGCTGTTTCAAGCTGCT GGACATCCCCCATCTCTTCCTACCATGGCTGATGCCCTGGCCCATGGAGCTGATGTCAACTGGGTCAATG TGGGCCAGGGGAATGCCACACCTCTGATCCGGGCCACAGCTGCTAACTCTCTTCTGGCCTGCGAGTTTCT CCTCCAAAATGGGGCGAATGTGAACCAAGCAGACAGTGCCGGCCGGGGTCCTCTCCACCATGCCACCATT CTTGGTCACACAGGGCTCGCTTGCCTGTTCCTGAAACGGGGTGCTGATCTGGGGGCTCGAGACACAGAAG GCAGGGACCCTCTGACTATCGCAATGGAAACCACTAATGCTGACATCGTAACCCTGCTACGATTGGCAAA GATGAGGGAGGCTGAAGCGGCCCAGGGCCAGGCAGGAGACGAGACGTATCTCGACATATTCCGAGACTTC TCCCTCATGGCGTCGGACGACCCAGAGAAACTGAGCCGTCGCAGTCA
Notes:	The probe template was PCR amplified from IMAGE:875258 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:875258 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10454 same embryo
	EMAGE:10452 same embryo
	EMAGE:10453 same embryo
	EurExpress:euxassay_000913 same experiment
	MGI:4822905 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source