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EMAGE:11520

Nkap NFKB activating protein ( MGI:1914300)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11520
euxassay_006933_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11520Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11520_wholemount_moderate.wlz
11520_wholemount_weak.wlz
11520_wholemount_possible.wlz
11520_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11520_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7129
Entity Detected:Nkap, NFKB activating protein ( MGI:1914300)
Sequence:sense strand is shown

>T7129
AGGACTCTGGGTCCGGGGGAAGGGGTTTACCGCTGTACACGGAACTGTTTCCAAGTTGGTTTTTTTGTTT
GTTTGTTTGTTTGCTTGCTTTTTTTCGGATTTGGTCGGCTGCAAGCTCTAGGACCCTAGGTGTCCGGGAC
CTTTGGGGGTCGCGAGAGCGCCTCCTTGTCCCGCCCCTTGGTAGCTTCAGCTTCCCCCACCATGGCTCCT
GTATCGGGCTCGCGTAGCCCTGAACGGGAGGCCTCCGGGGCGAAGCGTCGCAGTCCATCGCGGAGCCCCA
AATCCATCAAATCTTCCCGCTCCCCGCGGTGTCGCCGGTCTCGCTCGCGCTCTTGTTCTCGGTTCGGCGA
CCGGAATGGCCTCAGTCATTCGCTGAGTGGCTTCAGCCAAAGCTCCCGAAATCAATCTTACCGCTCCCGC
TCTCGATCGCGCTCTCGCGAACGGCCCTCGGCACAGCGGAGCGCCCCGTTTGCTTCTGCATCCTCGTCCG
CCTATTACGGCGGCTACTCGCGTCCCTACGGGGGCGACAAGCCATGGCCTAGCCTGCTGGACAAGGAAAG
GGAGGAGAGTCTCCGGCAGAAGAGATTAAGTGAAAGAGAGAGGATTGGAGAATTGGGAGCTCCTGAAGTT
TGGGGACTTTCCCCAAAGAATCCTGAACCAGACTCTGATGAACATACACCAGTAGAGGATGAAGAACCAA
AGAAAAGCACTACTTCAGCATCTAGTTCAGAAGATGATAAGAAGAAGAAAAGGAAATCTAGTCATTCAAA
AGAAAGAGCCAAGAAAAAGAGAAAGAAAAAGTCATCTAAAAGAAAACATAAAAAGTATTCTGAAGATAGC
GACAGTGACTCTGAATCTGACACAGACTCCAGCGATGAAGATTCAAAAAGAAGAGCAAAGAAAGCTAAGA
AAAAGGACAAGAAAAAGAAACGAAGAGGGAAGAAATACAAGAAAAAGAAGTCTAAGAAAAACAGAAAAGA
GTCCAGTGATTCGAGCTCTAAAGAGTCCCAAGAAGAATTTCTAGAGAATCCTTGGAAGGATCGATCAAAG
GCAGAAGAACCATCAGATTTGATTGGCCCAGAGGCTCCCAAAACTCTTGCCTCCCAAGATGATAAGCCTT
TGAACTATGGCCACGCTCTGTTACCTGGTGAAGGCGCAGCTATGGCTGAATATGTAAAAGCTGGCAAGCG
TATCCCAAGAAGAGGTGAAATTGGCTTGACAAGTGAAGAGATCGCATCATTTGAATGTTCCGGTTACGTA
ATGAGTGGTAGCAGGCATCGCCGAATGGAGGCTGTTCGACTTCGGAAAGAGAACCAGATCTACAGTGCTG
ATGAGAAGAGAGCCCTTGCATCCTTTAACCAAGAAGAAAGACGAAAGAGGGAGAACAAGATTCTGGCCAG
CTTTCGTGAGATGGTATACAGAAAGACCAAAGGGAAGGATGACAAGTGAGGACTTCTTGGCTTTACAAGT
GAATATTTTTAACATCGAAAAGGAAATTGTGGGTTCTAACAACAAAAGCTTATTCTTTTGTTTCTGTTTT
GAGTTATTGTTTGATGTATGGTTTCAACTAGCCCAGGTTGACCTCAGGCTTTGTAGCCAAGGATGACTCT
GAACTCTTGGTCTCCTGCCTCCACCTTCCAAGTGCTGAAATTCGAGGTGTGTGCCACCAGGCTCAGCCAA
AAAGGCTACTGTGCTATGAAGTGGCTTTTCAGGGCTTCTGTGCCTTCTTTTTAATTCTTCAGTCCTTCAA
TAAAAGATGCTTGTTGATAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4019392 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4019392 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_006933 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS