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EMAGE:14159

Crisp3 cysteine-rich secretory protein 3 ( MGI:102552)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14159 EMAGE:14159
euxassay_001842_01 euxassay_001842_02

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14159Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14159_wholemount_strong.wlz
14159_wholemount_moderate.wlz
14159_wholemount_weak.wlz
14159_wholemount_possible.wlz
14159_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14159_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4438
Entity Detected:Crisp3, cysteine-rich secretory protein 3 ( MGI:102552)
Sequence:sense strand is shown

>T4438
CCCACGCGTCCGGGACAACACCTCATTCTACTCTGAAGCCAGCACTATGGCATTAATGCTTGTGCTGTTC
TTCCTGGCTGCTGTACTGCCCCCATCCCTTCTTCAAGATAACTCTCAGGAGAACAGTCTTGAGAAACTTT
CAACCAGTAAAAAATCAGTCCAAGAAGAGATTGTAAGCAAGCACAACCAATTGAGACGAAAGGTTTCTCC
ATCTGGCAGTGACTTACTAAATATGGAATGGAACTATGATGCTCAAGTGAATGCTCAGCAACGGGCAGAC
AAGTGTACATTCAGTCACAGTCCTATAGAACTCAGGACAACTAATTTAAAATGTGGTGAGAATTTGTTCA
TGTCATCTTACCTTGTACCATGGTCTTCTGTAATCCAAGGATGGTATAATGAATCCAAAGGTCTTATATT
TGGTGTGGGCCCAAAGCAAAATGTTAGTGTGGTTGGACATCATACTCAGGTTGTTTGGAAATCAAATTTA
CAAGTTGCATGTGGAGTTGCTGAATGCCCTGAAAATCCACTGAGATACTTTTATGTTTGTCGCTATTGTC
CTGTATTGAATTACAGTGGCCATTATCCAAGCAGGCCATACCTAGCTTACACAGCAAGAGCACCATGTGC
CAGTTGTCCTGATCGCTGTGAAGATGGACTGTGCACCAAGAGTTGTCAATATAAGGATATGTCTTTTTGG
TGTAAACGTCTGGAATACGTCTGTAAACATCCAGGTCTTAAAAAACGTTGCCTAGCTACATGCCAATGTT
AAGGCAAAATTCACTAAATTTCCTGTCCAGGCTGCCAGGACCAAGTAGAGAAAGGTCATACTCTCTAGTC
AGGCTTATCACATCCCACCAAGAATATATAGATTTAATACATTGGAACAATTCCAGATGGTAAAGATTCT
GTTTCTTCTTCTATTTCTTTCTATTTTGCAGATATCATTTACCCCAAATATTTTAAAGTAACAAAATTGA
TAATAACCTTTGGACCTTGACATTTGAAATCTGTGACACATTCATGAAGTCAAATCTAGCCAATGACTAT
ACATTGTCTGTATGACTAAAGTCACTAAAACTCATATGACTAATGTTCCAAGAGCACAATGAAGTAAGGG
AATAGAAAACATATAGTTCCTGTGTAATGGTCAGTCATCTTTTGTAGCTCTACCTAGTTAAGTCTCTCTG
AAGAAAATTCACATTGTCTTTTTTTTTTCTCACTATTCATTATTCTTCACATTCAACATAATCAGTGGTT
TAAATTCTAAAATACCATTTACATTTTAGTTGTTTCTTTTCTAAGAATGATATAAAATGTACCTTAATGA
GAAGAATTTGCTTGTTCAGGGGACAATGACCTTTGTTGCTTTAGAAAAAAAATAAATCTTAATCTTGGCT
TAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4925349 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4925349 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14163 same embryo
 EMAGE:14162 same embryo
 EMAGE:14158 same embryo
 EMAGE:14160 same embryo
 EMAGE:14161 same embryo
 EurExpress:euxassay_001842 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS