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EMAGE:14961

Serpinb9 serine (or cysteine) peptidase inhibitor, clade B, member 9 ( MGI:106603)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14961 EMAGE:14961 EMAGE:14961 EMAGE:14961 EMAGE:14961
"Pseudo-wholemount" of euxassay_007997. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007997_01 euxassay_007997_02 euxassay_007997_03 euxassay_007997_04
EMAGE:14961 EMAGE:14961 EMAGE:14961 EMAGE:14961 EMAGE:14961
euxassay_007997_05 euxassay_007997_06 euxassay_007997_07 euxassay_007997_08 euxassay_007997_09
EMAGE:14961 EMAGE:14961 EMAGE:14961 EMAGE:14961 EMAGE:14961
euxassay_007997_10 euxassay_007997_11 euxassay_007997_12 euxassay_007997_13 euxassay_007997_14
EMAGE:14961 EMAGE:14961 EMAGE:14961 EMAGE:14961 EMAGE:14961
euxassay_007997_15 euxassay_007997_16 euxassay_007997_17 euxassay_007997_18 euxassay_007997_19
EMAGE:14961 EMAGE:14961 EMAGE:14961
euxassay_007997_20 euxassay_007997_21 euxassay_007997_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14961Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14961_wholemount_strong.wlz
14961_wholemount_moderate.wlz
14961_wholemount_weak.wlz
14961_wholemount_possible.wlz
14961_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14961_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4436
Entity Detected:Serpinb9, serine (or cysteine) peptidase inhibitor, clade B, member 9 ( MGI:106603)
Sequence:sense strand is shown

>T4436
AGTCCCTGCCTTGTACAGGCAGCTCTGAAAGCCTACTGGGAGCATCAAGGCTGCAAACGCTGGATTGAGA
AGCCGCAACTGTGACTCTGCATCATGAATACTCTGTCTGAAGGAAATGGCACCTTTGCCATCCATCTTTT
GAAGATGCTATGTCAAAGCAACCCTTCCAAAAATGTATGTTATTCTCCTGCGAGCATCTCCTCTGCTCTA
GCTATGGTTCTCTTGGGTGCAAAGGGACAGACGGCAGTCCAGATATCTCAGGCACTTGGTTTGAATAAAG
AGGAAGGCATCCATCAGGGTTTCCAGTTGCTTCTCAGGAAGCTGAACAAGCCAGACAGAAAGTACTCTCT
TAGAGTGGCCAACAGGCTCTTTGCAGACAAAACTTGTGAAGTCCTCCAAACCTTTAAGGAGTCCTCTCTT
CACTTCTATGACTCAGAGATGGAGCAGCTCTCCTTTGCTGAAGAAGCAGAGGTGTCCAGGCAACACATAA
ACACATGGGTCTCCAAACAAACTGAAGGTAAAATTCCAGAGTTGTTGTCAGGTGGCTCCGTCGATTCAGA
AACCAGGCTGGTTCTCATCAATGCCTTATATTTTAAAGGAAAGTGGCATCAACCATTTAACAAAGAGTAC
ACAATGGACATGCCCTTTAAAATAAACAAGGATGAGAAAAGGCCAGTGCAGATGATGTGTCGTGAAGACA
CATATAACCTCGCCTATGTGAAGGAGGTGCAGGCGCAAGTGCTGGTGATGCCATATGAAGGAATGGAGCT
GAGCTTGGTGGTTCTGCTCCCAGATGAGGGTGTGGACCTCAGCAAGGTGGAAAACAATCTCACTTTTGAG
AAGTTAACAGCCTGGATGGAAGCAGATTTTATGAAGAGCACTGATGTTGAGGTTTTCCTTCCAAAATTTA
AACTCCAAGAGGATTATGACATGGAGTCTCTGTTTCAGCGCTTGGGAGTGGTGGATGTCTTCCAAGAGGA
CAAGGCTGACTTATCAGGAATGTCTCCAGAGAGAAACCTGTGTGTGTCCAAGTTTGTTCACCAGAGTGTA
GTGGAGATCAATGAGGAAGGCACAGAGGCTGCAGCAGCCTCTGCCATCATAGAATTTTGCTGTGCCTCTT
CTGTCCCAACATTCTGTGCTGACCACCCCTTCCTTTTCTTCATCAGGCACAACAAAGCAAACAGCATCCT
GTTCTGTGGCAGGTTCTCATCTCCATAAAGACACATATACTACACAGGGAGAGTTCTCTCTTCAGTATCC
CTACCACTCCTACAGCTCTGTCAAGATGGGCAAGTAGGGGGAAGTCATGTTCTAAGATGAAGACACTTTC
TTCTTGTCAGCCTGATCTTATAATGCCTGCATTCAACTCTCCCTGTCTTGAATGCATCTATGCCCTTTAC
CAGGTTATGTCTAATGATGCCAAATACCTTCTGCTATGCTATTGATTGATAGCCTAGCCAGTAATTTATA
GCCAGTTAGAACTGACTTGACTGTGCAAGAATGCTATAATGGAGCTAGAGAGAAGGCACAAACACTAGGA
AAGGTTGCTGTTTTTGCAGAGGACACAGGGACATTTCCCACCACTCACATGGCTGCTTACAACCTCTGGA
AATTCCAGTTTCTGTCCATGACTTGATTCCTTTCTTTGGCTTCTACTGGCTCCAGCATCCTGCACATACA
TGTATCGTCATTCAGTTACACACAAACAAGTAAAATTTTAAAAATAAATAAAAATTTAAAGAGAGAGTCT
AAAATTTTAGTAATGGTTAGATAATAGCTGCTATTGTGCCTTTTTCAGGTTTTAATGTCATTATTCTTGT
GTATAAAGTCAATAATTTATAGGAAAACATCAGTGCCATGCTGTGATCTTATCTTCATCCCCTTTCAAAC
ACATTGTTTAACCATCAAGCAGTGACTCTCCATTCTTCCTCCCTTTGGACATATAACCACCAATCTTCTC
TCTGTCTCTGTAGCTTTATCTATTTTGGACATTTTATATAGACTGCCTCTTTGCTATCTTGATAATGTCC
TTTGATGCATACAGATTGCTTTTTTTCCAGTGATGTTCTCCTTATTTAATACTGTTCTGATCATGAGGTA
TGCATGCTGCAGCTAAGAATCTCACTACTAAAGTCAAGTATAGAAATAACTGTTCTTATGTTTTCCTCCA
AGGCCTTCATGGATTATACCTTATATATCTAGGTCACTGTTCCAGTTTGAATTAAATTCCATATGTGGTG
TGGTGTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4925100 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4925100 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14960 same embryo
 EMAGE:14957 same embryo
 EMAGE:14956 same embryo
 EMAGE:14959 same embryo
 EMAGE:14958 same embryo
 EurExpress:euxassay_007997 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS