Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:16127

Ralgps1 Ral GEF with PH domain and SH3 binding motif 1 ( MGI:1922008)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:16127 EMAGE:16127 EMAGE:16127 EMAGE:16127 EMAGE:16127
"Pseudo-wholemount" of euxassay_013574. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_013574_01 euxassay_013574_02 euxassay_013574_03 euxassay_013574_04
EMAGE:16127 EMAGE:16127 EMAGE:16127 EMAGE:16127 EMAGE:16127
euxassay_013574_05 euxassay_013574_06 euxassay_013574_07 euxassay_013574_08 euxassay_013574_09
EMAGE:16127 EMAGE:16127 EMAGE:16127 EMAGE:16127 EMAGE:16127
euxassay_013574_10 euxassay_013574_11 euxassay_013574_12 euxassay_013574_13 euxassay_013574_14
EMAGE:16127 EMAGE:16127 EMAGE:16127 EMAGE:16127 EMAGE:16127
euxassay_013574_15 euxassay_013574_16 euxassay_013574_17 euxassay_013574_18 euxassay_013574_19
EMAGE:16127
euxassay_013574_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:16127Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
16127_wholemount_strong.wlz
16127_wholemount_moderate.wlz
16127_wholemount_weak.wlz
16127_wholemount_possible.wlz
16127_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:16127_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T45307
Entity Detected:Ralgps1, Ral GEF with PH domain and SH3 binding motif 1 ( MGI:1922008)
Sequence:sense strand is shown

>T45307
ACAGAGTGGATGGCGTTAATCTTCGAGAGGGCTGGAAAGCAGAGACGGGCTGCTGGACAGGCTTGTTACA
CCCCAAGTGCACCGGCCACTCACCCACAGGGCCGCCTCCGATTTTGTATACCCTTAAAGCATCCTGTGTG
TGTGTGCGCGCGGTGTGTGTGTGTGAGCGAGTGAGTGTGAACGCTTTGAGAAACATACATTTTGGCACAA
GACTTGTGACATCACACACTTATTGGCTTTGAGTCCCTGCTTGAAGCTTTAGTTACAGCCTTGTCCTCTA
AGAAAAGT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from genomic DNA prepared from tail-tips of two wild-type C57BL/6J mice), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 186809. Forward Primer - name:186809_F_exon_Ralgps1, sequence:ACAGAGTGGATGGCGTTAATCT; Reverse Primer - name:186809_N_SP6_exon_Ralgps1, sequence:ACTTTTCTTAGAGGACAAGGCTG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:16128 same embryo
 EMAGE:16129 same embryo
 EMAGE:16131 same embryo
 EMAGE:16130 same embryo
 EMAGE:16132 same embryo
 EurExpress:euxassay_013574 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS