EMAGE mouse gene expression spatial database

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EMAGE:16882

Lsm3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) ( MGI:1914928)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_008683_01	euxassay_008683_02	euxassay_008683_03	euxassay_008683_04	euxassay_008683_05

euxassay_008683_06	euxassay_008683_07	euxassay_008683_08	euxassay_008683_09	euxassay_008683_10

euxassay_008683_11	euxassay_008683_12	euxassay_008683_13	euxassay_008683_14	euxassay_008683_15

euxassay_008683_16	euxassay_008683_17	euxassay_008683_18	euxassay_008683_19	euxassay_008683_20

euxassay_008683_21	euxassay_008683_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

16882_wholemount_strong.wlz

16882_wholemount_moderate.wlz

16882_wholemount_weak.wlz

16882_wholemount_possible.wlz

16882_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:16882_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T3169
Entity Detected:	Lsm3, LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) ( MGI:1914928)
Sequence:	sense strand is shown >T3169 TGGCCTCGAGCCAGATTCGGACGAGGGATCAGCAACAGACCACCAATACCGTAGAGGAGCCCCTGGATCT GATCAGGCTCAGCCTGGATGAGCGAATTTATGTGAAAATGAGAAATGACCGAGAGCTTCGAGGCAGACTA CACGCTTATGATCAACATTTAAATATGATCCTGGGAGATGTAGAAGAAACTGTGACAACGATAGAGATTG ATGAGGAGACATATGAAGAGATATATAAATCCACAAAACGAAACATCCCTATGCTCTTCGTCCGGGGAGA TGGCGTCGTTCTAGTCGCCCCTCCATTGAGAGTTGGCTGAGACAAAAGATGGATCCTGTGTAGGAAAGTG GAGACTTTGCCTCTTGAGATGTACAGGACACTCCCAGAGAGAGACGCTCACACGAATCCTGATAGTCAGA AATGACCCCAGGATCACTCTACCCTCGAAGAAGTTCATTTGCAAGCAACTCACAAGCTCTCCAGCTAAAT GACCTGTCCCTTTCTCCAGCCCTCCAGTCAGTGTGACCGTCTTGCTCTTTTCAGGAGTTGGTTTGCCCAT TGT
Notes:	The probe template was PCR amplified from IMAGE:1548270 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1548270 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:16884 same embryo
	EMAGE:16883 same embryo
	EMAGE:16881 same embryo
	EMAGE:16880 same embryo
	EurExpress:euxassay_008683 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source