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EMAGE:17576

Gm4952 predicted gene 4952 ( MGI:3643569)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17576
euxassay_005914_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17576Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17576_wholemount_strong.wlz
17576_wholemount_moderate.wlz
17576_wholemount_weak.wlz
17576_wholemount_possible.wlz
17576_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17576_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
embryo
strong strong
ubiquitousstrong expression: see section 01
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T10042
Entity Detected:Gm4952, predicted gene 4952 ( MGI:3643569)
Sequence:sense strand is shown

>T10042
AGGTGAGGACCAGGAGAAGCTGGCACGTGGGAACTCCTCATCTCCTTTTGGCTTTCCACTGAAGGGGATG
AATCACAATATTCCTGTTGGATAAAGGATAAGGTAGCTAAAAAGATGCTCCATTTGCGAAGTTCACAGAT
GCTGCAGATGTTGGAGAGCTCCTTAAGGAAATACCTTCCTGAGTCCTTAAAGGTTTATGGGACTGTCTTC
CACATGAACCAGGGAAACCCATTCAAGCTCAAGGCTCTGGTGGACAAGTGGCCTGATTTTAATACAGTGG
TTGTCCGTCCTCGGGAACAGGAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTC
TAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAACAGCATCTGCAG
ATCCAAAGTTCACAGTCCAACCTAAATGAAGCAATAATGGACCTTGCGGCGGGTAAGATGGTCAAGGTCA
AGAGAACACAGTGCATTCTCTACATGATGCCTGAGACAGCAAAGAAACTGGTTCCTTCCCTGTTGGAGGA
TAAAGAGTGCTTAGACCATCAATCTGGCAGGCCCCGGGCTATTGACCAAGAAATGTTTAAACTCTCAACA
CTGGATGTTACCCACGCTCCCTTGGTGGATAAATTCTGGCAGTTTGGTGGCAATGAAAGGAGCCAGAGAT
TCATTGGGCGCTGTATCCAGATCTTTCCCAGCTCATGTCTTCTGGGACCTGAAGGGACTCCTGTGTCTTG
GGCTCTGATGGATCAAACTGGAGAAATCCGAATGGCGGGCACAGTGCCTGACTACCGGGCACAAGGCCTT
ATCTCCCACATCATTTATGCTCAGACTCTGGCTATGGATAAACGTGGCTACCCTGTGTATAATCATACAG
AATAAACCAACAAAGTCATACAGAAAATGAGTCACACTCTACACCATGTCCCCATGCCCTGTGACTGGAA
TCAGTGGTATTGTGCACCTCTGTGATTCTAGTACTCAACACAAGGCTGTGTTGGGTCAGCCATAATAAAT
CTGGGGGAGTGGTCATAGAGAAAACACAGATTGTAATGAACAATAAAGGAGTGGGCATTGCTTGGGCTCT
GGGGAAGCAGTGTGAATGGTCAACACTATACCATGGTCCTTACCCTCATATTACTTTTTATATCCAGCAG
ACCTGTAATGGCCAGACCTCTCTGCTGAGCCATCATCTTTGTTTAGTTTTCTATATTCTGGATATCAGTG
ACACATGTACTCAGTGGCACATTACAATCCTCATGTGGATTATTGCCCATGATCAGTTTTGTCGGGATGT
GGTGCTGATGGGGGACTAGTGTGTGCTTTTCTCCAGCATTCCTTTGTTTAGGAGTTAGAATACTTCCCAT
CAACAGGTACTCTGAAAAGATCGCTTCAGTGGAAGTCCTTTGATCTCTGTTTAATTTCCATGCCAAATAA
TGAATGAATAAATATATGATAGTAGTTGGATGAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6768245 using vector (pDONR 201) specific primers. Forward Primer - name:T7-pDONR 201-fw, sequence:CGTAATACGACTCACTATAGGGCTCGCGTTAACGCTAGCATGGAT; Reverse Primer - name:T3-pDONR 201-rv, sequence:CAAATTAACCCTCACTAAAGGGGTGCAATGTAACATCAGAGA. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6768245 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17574 same embryo
 EMAGE:17575 same embryo
 EMAGE:17573 same embryo
 EurExpress:euxassay_005914 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS