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EMAGE:18237

St6galnac3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 ( MGI:1341828)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:18237 EMAGE:18237 EMAGE:18237 EMAGE:18237 EMAGE:18237
"Pseudo-wholemount" of euxassay_012015. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_012015_01 euxassay_012015_02 euxassay_012015_03 euxassay_012015_04
EMAGE:18237 EMAGE:18237 EMAGE:18237 EMAGE:18237 EMAGE:18237
euxassay_012015_05 euxassay_012015_06 euxassay_012015_07 euxassay_012015_08 euxassay_012015_09
EMAGE:18237 EMAGE:18237 EMAGE:18237 EMAGE:18237 EMAGE:18237
euxassay_012015_10 euxassay_012015_11 euxassay_012015_12 euxassay_012015_13 euxassay_012015_14
EMAGE:18237 EMAGE:18237 EMAGE:18237 EMAGE:18237 EMAGE:18237
euxassay_012015_15 euxassay_012015_16 euxassay_012015_17 euxassay_012015_18 euxassay_012015_19
EMAGE:18237 EMAGE:18237 EMAGE:18237
euxassay_012015_20 euxassay_012015_21 euxassay_012015_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30676
Entity Detected:St6galnac3, ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 ( MGI:1341828)
Sequence:sense strand is shown

>T30676
CGGCCCTATCAATTGCACTTTAAAACTTACCTACGGTTGAAATGAAGGCCAGTGACCTGATGGCTGTGAC
TAAAGAAAACACGAAGATTACCTTTCAAGATAGCTGCTCAGAATTCTTCAAGAGGCTTCCAGAAGTGACG
ACTTCTGCCTGCTCAGGCAAGCTTACTGAGTGCACGGGCTGCTCCCCATCTTGGAAAATGGTGGACTATC
AAACACTGTCCCAAGTCATCCTTCAGGGTATAGATGTCATGCCACAGTTACCAGTCAGCCTGATAGAGGG
GAGGTATCTCTTTCTGATATGCCATCTTCCTTCCATATGTCTCTCAGCGAAAGCCTCAGGCCACCTACCT
AAATGTAGCAATGAAGGCATTCTGTAATTCCTGCGTACCAGGATTACTGGACTATCTCAGAGACTTAATT
CAAAATGTATCAAGTAGCAAATATTGACAAATTTTCACTCAGACAGCTGTGCTCTCACTACTCAAAACAA
TATAACTAAACATATTATTACAGTTACCTACGTTAATGTTTAGTTATTTTTGGTTGAGTGCTAAGTATTA
ACATGTTAGATATACTTCAACACTGTAATAACACATACTGTGAAAGCATTTCTTGAGCATAACCAAAGGG
TTTCTCTCTCTGCTTCAGCACTCAGTACCAACAAATGAGATGCTTTTTGAATCACAAAACAGGGAAAGCA
AGACATATTTTTGCATCAATTTGTATCCTATCATATTCATAATATATATTTTTAAATTCAAATTTCTATT
TTATAAGCTGAAAGGGTATCTTTCCATATACATTATCAATGCCAAGTGCCAAACACTCTTTATACCATCA
AACCCAGGCTGAGCTTTTGCCTTCATGGGGTTGACCATCCC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:6817021), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 59669. Forward Primer - name:059669_F_IRAV117_f05_Siat7c, sequence:CGGCCCTATCAATTGCAC; Reverse Primer - name:059669_R_SP6_IRAV117_f05_Siat7c, sequence:AGGGATGGTCAACCCCAT. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:18239 same embryo
 EMAGE:18236 same embryo
 EMAGE:18235 same embryo
 EMAGE:18238 same embryo
 EMAGE:18234 same embryo
 EurExpress:euxassay_012015 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS