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EMAGE:19533

Nup37 nucleoporin 37 ( MGI:1919964)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19533 EMAGE:19533 EMAGE:19533 EMAGE:19533 EMAGE:19533
"Pseudo-wholemount" of euxassay_006091. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006091_01 euxassay_006091_02 euxassay_006091_03 euxassay_006091_04
EMAGE:19533 EMAGE:19533 EMAGE:19533 EMAGE:19533 EMAGE:19533
euxassay_006091_05 euxassay_006091_06 euxassay_006091_07 euxassay_006091_08 euxassay_006091_09
EMAGE:19533 EMAGE:19533 EMAGE:19533 EMAGE:19533 EMAGE:19533
euxassay_006091_10 euxassay_006091_11 euxassay_006091_12 euxassay_006091_13 euxassay_006091_14
EMAGE:19533 EMAGE:19533 EMAGE:19533 EMAGE:19533 EMAGE:19533
euxassay_006091_15 euxassay_006091_16 euxassay_006091_17 euxassay_006091_18 euxassay_006091_19
EMAGE:19533 EMAGE:19533 EMAGE:19533
euxassay_006091_20 euxassay_006091_21 euxassay_006091_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19533Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19533_wholemount_strong.wlz
19533_wholemount_moderate.wlz
19533_wholemount_weak.wlz
19533_wholemount_possible.wlz
19533_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19533_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
olfactory cortex ventricular layer
weak weak
regionalweak expression: see section 09 10 14 15
telencephalon ventricular layer
weak weak
regionalweak expression: see section 02 03 04 05 06 07 08 09 10 11 13 14 15 16 17 18 19 20 21 22
midbrain ventricular layer
weak weak
regionalweak expression: see section 08 09 10 11 12 14 15 16
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6933
Entity Detected:Nup37, nucleoporin 37 ( MGI:1919964)
Sequence:sense strand is shown

>T6933
GCGGGCGCACGCCCCGGCCACCTATGGTCAAGAGAGCCTTGCCCAGGTCGCCTCCCCTGCTTTAGTTTCC
TGACAGGCAATAAACGGCTATTTGATTCTTACAACTGCTCCAGCTTTGGGATACAAGATGAAGCAAGATG
CTACAAGAAATGCTGCGTACACCGTGGATTGCGAAGATTATGTGCACGTGGTAGAATTTAATCCCTTTGA
GAGTGGAGATTCAGGAAACCTGATTGCATATGGCGGCAGTAATTATGTGGTTGTTGGCATGTGTACGTTT
CAGGAGGAAGAAACAGACATCGAAGGGATTCAGTATAAAACACTACGAACATTTCACCATGGAGTCCGAG
TTGACGGCATTGCCTGGAGCCCAGAGACCAAACTTGACTCGCTGCCTCCTGTAATCAAATTTTGTACTTC
AGCTGCTGATTTGAAGATTAGATTATTTACTTCAGATCTTCAAGATAAAAATGAATATAAGGTTTTGGAG
GGCCACTCAGACTTCATTAATGATCTGGTGTTCCATCCCAAAGAAGGCCAGGAGCTCGCAAGCGTGAGTG
ACGACCACACCTGCAGGATTTGGAACTTGGAAGGAAAGCAGACAGCTCATTTTCTTCTGCATTCTCCTGG
AATGAGTGTATGCTGGCATCCCGAGGAAACTTTCAAGCTAATGGTTGCAGAGAAGAATGGAACAATCCGG
TTTTATGATCTAATGGCTCAGCAGGCAATTTTATCTCTTCAGTCAGAACAGACACCCTTAATGTCAGCAC
ACTGGTGCTTAAAAAACACCTTCAAAGTTGGTGCTGTGGCAGGAAATGATTGGATTATTTGGGATATCAC
TCGGTCCAGTTATCCTCAAGAAACAAGACCTGTTCACATGGACCGAGCACACTTATTTAGGTGGTCGGCC
ATTAGTGAAAACTTGTTTGCAACCACTGGATATCCTGGCAAAATGGCCAGTCAGTTTCAGATTCATCATT
TAGGGCACTCTCAGCCCGTCCTCATTGGTTCTGTAGCTGTCGGTTCTGGTCTTTCCTGGCATAGAACACT
TCCACTGTGTGCAGTTGGAGGCGACCACAAGCTCTTGTTCTGGGTGACAGAAATATGATTTTCCTCTGTA
TTTTTGATCCTTCACTTTGTATTTTTAGTATATATTTTGGAAAAATCCTTATTTTTATATCAAACATACT
GTAAATCTAGAAATGCCTCAGTTGTCTTTTCTGATAAATAAAATGATAAAGACTACATGAAAAAAAAAAA
AAAAAA
Notes:The probe template was PCR amplified from IMAGE:3982076 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3982076 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19535 same embryo
 EMAGE:19532 same embryo
 EMAGE:19537 same embryo
 EMAGE:19536 same embryo
 EMAGE:19534 same embryo
 EurExpress:euxassay_006091 same experiment
 MGI:4826833 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS