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EMAGE:19707

4921536K21Rik RIKEN cDNA 4921536K21 gene ( MGI:1914680)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19707
euxassay_006420_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19707Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19707_wholemount_strong.wlz
19707_wholemount_moderate.wlz
19707_wholemount_weak.wlz
19707_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19707_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9692
Entity Detected:4921536K21Rik, RIKEN cDNA 4921536K21 gene ( MGI:1914680)
Sequence:sense strand is shown

>T9692
TTTCCACCATGGTTTTAGGTCTTGCTAGCTTTCCTGAGTCGCTCTCTAGCCAGTCAGAGACCGCTACACA
GCCCAGAAGGCCTTCAGTCAAATGGGACTTGGGCTCGGATTACAGGAAAGGTACCGAAGAGACTACCGCT
TCTGGTTCGAACTTCCGGCGCGAGAGACTGGACAGCCAGCCGGATCTTGGCCTCCACGTCCAACCACAGA
TCTACTTCCTGCGGCCGCGGTCCCCACTCCCCAAGTTGTTATTCAGCTTAATGAATACCAATGATGCAAA
CGTGAAGAAGCTGTTGCCCAAGAGCCATTTATCTCGGGTGATTATTCGTGACAACCTCAACGCACAGCGT
ATCTGCGAGATGGAGATGAAAGCCTCTGACAAGACCAAGAGGAAGATGAGCTACTTGTACGACCACCTGA
AAAAGAAGTTCATGATGGACCAGCTGAGAAAGATGATTCGCTGGAGGCGCGATTCCCAGAGCACCCAGGA
CTACTTGGATAAGGAACGGGTCTGAAGATGCTAGAGATGGCGAGCCTTACCACCCTGAACCATGGCAGAA
TGATCTGCCCCAAGAACAGAACCACCCTGGTGAGAGCGGAGGAGCCCCAGAGCAGTTGGTCTCCACCATG
GTAGAGCAATAAAAGGAAAGTTGTGGATAGGATAGGAGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
Notes:The probe template was PCR amplified from IMAGE:6704927 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6704927 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19710 same embryo
 EMAGE:19709 same embryo
 EMAGE:19706 same embryo
 EMAGE:19708 same embryo
 EurExpress:euxassay_006420 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS