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EMAGE:20357

Thnsl2 threonine synthase-like 2 (bacterial) ( MGI:3041254)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:20357 EMAGE:20357 EMAGE:20357 EMAGE:20357 EMAGE:20357
"Pseudo-wholemount" of euxassay_012574. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_012574_01 euxassay_012574_02 euxassay_012574_03 euxassay_012574_04
EMAGE:20357 EMAGE:20357 EMAGE:20357 EMAGE:20357 EMAGE:20357
euxassay_012574_05 euxassay_012574_06 euxassay_012574_07 euxassay_012574_08 euxassay_012574_09
EMAGE:20357 EMAGE:20357 EMAGE:20357 EMAGE:20357 EMAGE:20357
euxassay_012574_10 euxassay_012574_11 euxassay_012574_12 euxassay_012574_13 euxassay_012574_14
EMAGE:20357 EMAGE:20357 EMAGE:20357 EMAGE:20357 EMAGE:20357
euxassay_012574_15 euxassay_012574_16 euxassay_012574_17 euxassay_012574_18 euxassay_012574_19
EMAGE:20357
euxassay_012574_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:20357Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
20357_wholemount_strong.wlz
20357_wholemount_moderate.wlz
20357_wholemount_weak.wlz
20357_wholemount_possible.wlz
20357_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:20357_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
kidney calyx
moderate moderate
regionalmoderate expression: see section 05 06 14 15
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T31548
Entity Detected:Thnsl2, threonine synthase-like 2 (bacterial) ( MGI:3041254)
Sequence:sense strand is shown

>T31548
GAGTTGTGGCATGGGGTCACATATGCCTTTAAGGACCTGTCCCTGTCCTGCACAGCACAGTTCCTGCAGT
ACTTCCTGGAGAAGAAGAAGAAGCATGTCACCATTGTTGTGGGAACTTCTGGGGACACGGGAAGTGCTGC
CATTGAGAGTGTTCAAGGATCCAAGAATGTGGACATTATTGTTCTGTTGCCCAAAGGCCATTGCTCAAAG
ATCCAGGAGCTCCAGATGACAACGGTGTTAAAGGAGAACGTTCATGTGTTTGAAGTGGAAGGAAACAGCG
ATGAGCTTGACGAACCCATCAAGGCCGTGTTTGCTGATGTGGCCTTTGTCCAGAGGCACAACGTGATGAG
CTTGAACTCCATCAACTGGTCTCGGGTCCTGGTGCAGATGGCACACCACTTCTTCGCTTATTTCCAGTGT
ACACCGTCCTTGGATACGCACCCCCTGCCCACAGTGGAGGTGGTAGTGCCGACGGGAGCTGGGGGTAACC
TTGCAGCTGGGTGCATTGCTCAGAAGATGGGCCTGCCTATCTGTCTGGTTGTGGCAGTGAACCGCAACGA
CATCATTCACAGGACTGTCCAGAAGGGAGACTTCTCTCTGTGTGAGGTTCTCAGAACAACCCTGGCATCT
GCTATGGACATTCAGGTTCCCTACAACATGGAGAGGATCTTCTGGCTGCTCTCTGGCTCTGACAGCCAGA
CAACAAGAGCCCTCATGGAACAGTTTGAAAGAACCCAAAGTCTGCAGCTACCCAAGGACCTACATAACAA
GCTTTCAGAGGCAGTGACATCTGAGTCTGTGACTGATGAGGCCATCACCCAGACTATGGCCCGCTGCTGG
GAGGAGAACCA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:5250319), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 37906. Forward Primer - name:037906_F_IRAV67-70_L19_BC051244, sequence:GAGTTGTGGCATGGGGTC; Reverse Primer - name:037906_R_SP6_IRAV67-70_L19_BC051244, sequence:CTGGTTCTCCTCCCAGCA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:20356 same embryo
 EMAGE:20355 same embryo
 EMAGE:20354 same embryo
 EurExpress:euxassay_012574 same experiment
 MGI:4828699 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS