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EMAGE:21350

Rin1 Ras and Rab interactor 1 ( MGI:2385695)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21350 EMAGE:21350 EMAGE:21350 EMAGE:21350 EMAGE:21350
euxassay_000096_01 euxassay_000096_02 euxassay_000096_03 euxassay_000096_04 euxassay_000096_05
EMAGE:21350 EMAGE:21350 EMAGE:21350 EMAGE:21350 EMAGE:21350
euxassay_000096_06 euxassay_000096_07 euxassay_000096_08 euxassay_000096_09 euxassay_000096_10
EMAGE:21350 EMAGE:21350 EMAGE:21350 EMAGE:21350 EMAGE:21350
euxassay_000096_11 euxassay_000096_12 euxassay_000096_13 euxassay_000096_14 euxassay_000096_15
EMAGE:21350 EMAGE:21350 EMAGE:21350 EMAGE:21350 EMAGE:21350
euxassay_000096_16 euxassay_000096_17 euxassay_000096_18 euxassay_000096_19 euxassay_000096_20
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euxassay_000096_21 euxassay_000096_22 euxassay_000096_23 euxassay_000096_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21350Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21350_wholemount_strong.wlz
21350_wholemount_moderate.wlz
21350_wholemount_weak.wlz
21350_wholemount_possible.wlz
21350_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21350_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T2258
Entity Detected:Rin1, Ras and Rab interactor 1 ( MGI:2385695)
Sequence:sense strand is shown

>T2258
GTGTGTCTNAAGACAGCTACAGAAATCTGTTGAGACACTGAAGTATTTCTGGGAAATTGGACCCTGAGAA
ATAATGCACGCTAGCAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCC
CACTCCTTGGGTCCTTACTAAAGCTTGATAATGAGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGG
TTAGGTAATTCCCAAGACGTTCCAGCAGACTAGCCCTCCAGGCTCAGGCAGCAGCCCCAGAGGGAAGCCC
ACTGCAAATCTGAGCAGAGAAAAATACCCACCAAAAGCCACAAGAGGGCGCATACAGCCCGAGAAGCTGC
TGAGGGTCACCCACCCTCTTCACTCCCCTACCCTGCCCGAGCAGTGGGAGGGGGGTGGCTAAAGAGAATT
TAAGAGCCTCAGAATGTGGACAGTCACTGGCCTCACACACTCTTATAGCAGCTTGGGACATAC
Notes:The probe template was PCR amplified from IMAGE:1066645 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1066645 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_000096 same experiment
 EMAGE:21349 same embryo
 EMAGE:21348 same embryo
 EMAGE:21347 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS