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EMAGE:24356

mm426 VISTA mouse element 426
TS19 (11.5 embryonic day)
regulatory element reporter

Data Images
EMAGE:24356 EMAGE:24356

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Images reproduced with permission from the VISTA Enhancer Browser. Element mm426 - embryo 1.
Expression Pattern Description
Spatial Annotation:
EMAGE:24356Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
24356_wholemount_strong.wlz
24356_wholemount_moderate.wlz
24356_wholemount_weak.wlz
24356_wholemount_notDetected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:24356_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
branchial arch
detected detected
VISTA annotation: branchial arch (7 out of 9 embryos)
ear
detected detected
VISTA annotation: ear (3 out of 9 embryos)
eye
detected detected
VISTA annotation: eye (5 out of 9 embryos)
head mesenchyme
detected detected
VISTA annotation: facial mesenchyme (8 out of 9 embryos)
genital tubercle
detected detected
VISTA annotation: genital tubercle (5 out of 9 embryos)
hindbrain
detected detected
VISTA annotation: hindbrain (rhombencephalon) (7 out of 9 embryos)
limb
detected detected
VISTA annotation: limb (9 out of 9 embryos)
midbrain
detected detected
VISTA annotation: midbrain (mesencephalon) (9 out of 9 embryos)
nose
detected detected
VISTA annotation: nose (9 out of 9 embryos)
somite
detected detected
VISTA annotation: somite (7 out of 9 embryos)
Annotation Validation: EMAGE Editor
Detection Reagent
Type:regulatory element reporter
Entity Detected:mm426 VISTA mouse element 426
Sequence:chr5:38216908-38220459  (UCSC mouse mm9 )
>mm426
GTGGGGACCACAGAAGACCTTGTAAACTGGGTTCGAACAGGCTGTTGGGGAGTTGGGGGGGGGGGGGCTT
TTCTTTATATGGCCTCTTATCCCAGGGCCCAGGCTCGCGGCTCCGGGGGAGGTGGAGGAGGTGATTGGCG
GCTCACCGGGACTGTGCATTGATGACTGCCGGGCTCTAATCTCCAGGAAACACAAGGGGCTGCCGTGGCC
ATTTAGGGGTAATTATCCGAGCACGGAGGGATAGCGAATTCCCTGGCCTTTTAACTGGGCGCAATAAAAA
GCTGTAGATTAGGGGCGACCAGATTAAGGAAAATGAATTACTTTATTACCCAGACGGCGTCCGGGGTCTG
GAGGGAGGGGTTGGGCTGCGGACGCCAGAGAGATCGGAGCCTCACATCTGCCCACAGGGCCTGGAGAAAT
AGGAAGGCCTGGGGCGGGTTCGGGAATACTCGCTTCTGTGAAATGTCTGGATTTCTTACGTTTCTGAGGC
TGTGAGGAGGCACTGCGTAGGGCTTGGGACTCAAGCTCATTTAGGCCCAGCTGGACGCCCGCTGTACTGG
GTCCCCTGAGGTTTGTTCCATGTGTATGGGAAGTAGAAGCCATACCGTCCCGTTTTAAAGCCCTGCAAAC
GAAAGTTAAGCGACAGTGTAGGCCAAATCCTTAGCTCGAAGCCTAGAAGGTACGGAGAACTGTAGTTTAA
GAACTAATTAGGCAGTTGCTAGATCATCTCGTTCTATAGCGTCAGCCGATTTACACTCTGCGCTCGGATT
AAAACAGAAATGGAAATAAATCTCCCAAATGGCTTGCTTTAGTCTAGTGTTTTTAGTACGAGGAGTGTTT
TTCAAAAAGTGAGGGTTTTCAGTTATTCCACCTCGATCCCCAACTTAAAATAATTTCCTTTTGGGAGCGA
TCGGAGAATCCAAGTAGCTACGATCTTTTTCCCGGGAAAAAAAGTGCATAACGGCTAAAATACGTGACAC
GCAACTGTGTAGACAACTTCAGGGACTCGTGTACTGGCCCAGAGTCTTAATTCCTGCTTTAGGACCGAGG
GGGCCTCGAACCCCAAGAATGGGGCCCCAGGGCGCACCGGGGTCTCCAGCGGAACTCACGGAGTGTGCAG
CAGTCGGAGCAAAGAGGCCTAGCCTCAGGCCGGGGAGGGGGCGGCCTGAGAAGGGCTGCATCGCTAATTG
CGGGGATAAACAATCTGTCACGATCCCTCAGCGCGCCTAATAGGCAGACGAGGATGTTGTTTTTAGGCGC
CAGCGGCGGCCGGATCAAAGGCTGCAGCCGGCGCAGGGGCCCTTGAAGTCGCGCCCCTGCCTCCAGGGAG
CAAAACGCCTGCGCCCGCAGCCCTGAGCCCTGCTTTCGGCCCCTGGGCTTTTAGAGTAGGTCTCAAACTC
CACTGTCTATTCTTTTGGGGTTCGGTGTGCATTTGGGTCTGCAGGGATTCGGCGCGCAGGCTAGCGGGTT
GCAAAGGTTGCAAGAGCGCTTTTGCAGAGCGCAAGGGACCGGACTCGATGGCTTCCAGAGCGCAGGACCC
ATGCTAAACTCTACCCAAGGGCTGCGCAGGGGAGGAAAATGCACCCCAACTCTGAGAAGGATGTCTGAGA
AACAAAATAAAAACCCGGTTCCCCAGCCATGTGGCTCATTCCCGAAAACGGAAAGGCATGCGTTTGGGAT
CAATGAGAGCAGGCAACCTCGGAGCTCATTTTTGTCTGACCTTTGCGGATTTCCTGGCCAGTGGGTTAAG
CGAGCTGACAGCCCAGGCTGGGCCTGTTATCTCACGGCAGCGCTAACCGGAGGTGCTGCTATCCCGACGC
GGTCGCTGCAGGCAGCGGAGAAAACGGACCGTAATTCATGCCTGGCAAGGGCAGGGCTGGCCCGCGGCAG
ATAAAACTCTAAGACAGGCTCTCTGCTTGCAGCCTGCTCGACTTTTCTCCCCTCCCCCTCGCTCTGTCTC
CCCTAGTCTCCTGCACCCTATATCTCGCCTGCCTTCGAATAAATTACCTTTGCCGGTTCAGATCCTAAAG
ACTAGTTCTGCGATCAATTTCTGGGCCGCTACTCTCCTTGGTGGCCTTTACCCCGCAACCCAAAATGCTC
GTTTGACTAGAGTATAGGACAACTGGGGTGTGTGATAGCTTCGATATGGTTCCTAGATATTTTCTCTTCC
CCCCTCCCCCCGCCAGCAGAAAATCAACTTGTAGAGGAATTCAATTTTAAAGGCAACTGTTACTACCTGA
GTATCTATCTGGCCCTGGGTTTGAAAAACTTAAGGGTTGGCCCTTCAGTACTGCGTTCGTTGTCACCCCC
ATCCCACTCCCTTTTCTAGTGCATTTTGTGGCCTCTGTCCAGAAACCCCGCATACATTTTTTTTATGTGC
GGCTCAGTGGGATCCGCCGGCAATTAGCTAGCCCCAAACAGTCCTCTTTAATAGAATGGATGTGCTATGG
AAACCGATTACCCGGAACGATTTATTTTTGTGGGGATTCACCAATCACCGGGAGGGCAGCGGAGGGAGAG
AGAAGAAGTATTTTGTCCCTGGGTGGGGGTGGGGTCTGATGGTTGGTCAGAAAGCCTCGTTCAGGGGGAT
CTGCTAACCTCCCGAGAGGCCCTCCCTTCTCTGCCATCTCCGAGCCTCTGACCCCTGCCTTCAAGCAAGG
GGCTAGAAGTTATGTTTGAGAAATTGCCCGGGAATCACTCGTTCAGGGAAGATTTTAAAGCTTTTCCAGG
ACAAAGCGCCACAGTTAAGAATTAGAAGAATCTTCAGTTCCAGAAAATGCAGAGGCGATAAAGATTTTTT
AAAAAAAAATGCTTCGGGTTTCCAAAGACTAGCCGAACTGGTGGAGTCCTTAGCGCTGGAACTGGCGCCG
CCAAAGGAACCCTTCCTGGAAGGTGTTTTTCCCTTTCTTGAGAACTCATTGACTTCTTCAGAGGAAGGGC
CCCAATCCTGCGGATTCACCTGGGGAACTGGCAGCTAGAGTCTGCAGCTTCTTGCTCTTTCCCGCCCATC
CCCCACTTGCTTAGGGTCCCACTTTCTCGGCTGGGCTTTCTTGTGTCTTTAAATTCGTGGGGGTTGAGGG
TGAGGGGCCAGTATCCGCGGAAGAGGGAGCTCCCTCTTCAAATGGCGCAAATTAATGCGATCGGGACTTG
AGGGCGCACTTGGGGAAGATGAAAGCGGAGGCCTGCCGGCTCCTACCAGGACTCTATAATTATAGATAAT
ATATCTCATTTCAAAGCAATTAGACCAATCAGGCGTAACGAACCACTTTGCTGCCTACGAATAACAAAGG
CGCACGGTTATTTAAGCCTGGAGATGTCAGGCAGACCCTAAGGCTCCAGGGGCCCGGACCCAAGTCCTCC
ACCCCGTCTCGGCCCACCGCTGTACCCGAGTTCCCCTCTCTTTGCCCGCCGACGGAGCACCGGTCTCGGC
TTTTACCCATGGCCTCGGGCGTACGGATTGGAGGGCATTGGAGAAACTTGGTGTCAGGCCTCTGGTCAGA
AGTTTTGAAAACTTTAGCTAACTTATTATTTTCTACTCTGGAACTTCGGAAA
(Equivalent human sequence - chr4:4856277-4860225  (UCSC human hg19 ))
Flanking Genes:Msx1as - Stx18 (mouse)
Primers:Vector specific   fwd:(+)caccGGACCACAGAAGACCTTGTA rev:(+)TTTCCGAAGTTCCAGAGTAG
Vector:Hsp68-Lacz
Labelled with:LacZ
Promoter:Hsp68
Specimen
Organism:mouse
Strain:FVB
Age:embryonic day 11.5
Theiler Stage:TS19
Preparation:wholemount
Procedures
Fixation:4% PFA (paraformaldehyde)
General Information
Authors:Pennacchio et al., 2007 [PMID:17130149] . Spatially mapped by EMAGE.
Principal investigator:Len Pennacchio, Genomics Division Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, Berkeley, USA CA 94720
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1093/nar/gkl822] [ PMID:17130149] Visel A, Minovitsky S, Dubchak I, Pennacchio LA 2007 VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Research (35):D88-92
Links:mm426 VISTA mouse element 426 same experiment
 EMAGE:24357 same experiment
 EMAGE:24358 same experiment
 EMAGE:24359 same experiment
 EMAGE:24360 same experiment
 EMAGE:24361 same experiment
Data SourceVISTA