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EMAGE:29593

Taf1a TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A ( MGI:109578)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:29593
euxassay_006136_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9669
Entity Detected:Taf1a, TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A ( MGI:109578)
Sequence:sense strand is shown

>T9669
GGCGAACAACGTGGAGTCGGGCGACTCTGGAGCTTGGATTTAGCGGCTCGCGGGCTCCGTACGCCTTGCG
CTTTCAGTGAAACAGGAAAAGATGATGAGTGATTTCGGTGAAGAGTTGACAAAGCTGGCTGTGGCAGAGG
ATAACCCAGAAACGTCGGTGCTCTCTAAAACGGGAATGCATTTCCCATGGCTTCACAAGCACGTTGAAGC
TGTAGTGACTGGAGGGAAGAAGAGGAAGGATTTTGCTCAGACGACAAGTGCTTGTTTAAGCTTTATCCAG
GAAGCCCTGCTGAAGCACCAGTGGCAGCAAGCTGCAGAGTATATGCACAGTTACCTGCAGACCCTGGAGG
ACTCAGACACCGACAAGAGACAGGCTGCCCCTGAGATCATTTGGAAGCTTGGAAGTGAAATTCTATTTTA
CCACCCCAAAAGCAATGTGGAGACTTTTAATAGCTTCGCTGACCGGATGAAAAATATTGGTGTCTTGAAT
TATTTAAAGATCTCCTTACAACACGCCTTGTATCTTTTACATCATGGAATGCTTGATGATGCGAACAGGA
ACCTGAGTAAGGCAGAGACGTGGAGGTATGGAGAAAAGTCGTCTTCTCAGGAAGTGTTGATCAACCTTGT
TCAGGCTTACAAAGGGCTTCTGCAGTACTACACTTGGACCAGAAAGAAGATGGAGTTGTCAAAGCTTGAT
GAAGATGATTACGCTTACGCCGCCAAAACCCGAACCATGCTCAGCCAGAGCTGCAAGACGTCTACAAATA
TCTGTGCACTGGTCAAAACCCCCGGGGTCTGGGATCCTTTTGTGAAGAGTTATGTGGAGATGCTGGAGTT
CTATGGTGATCAAGATGGAGCCCGAGAGATGCTCACCAATTATGCATATGATGAGAAGTTCCCGTCGAAC
CCCAACGCCCACGTCTACTTATACGAGTTTCTCAAGAGAGAGAAGGCACCGAGGGCGAAGCTCATAAGTG
TTCTTAAGATTTTACATGAGATTGTGCCATCCCATACACTAATGTTAGAATTCCATACATTGCTTAGAAA
ATCAGACACAGAAGAACACCAGAAACTGGGCTTGTCTGTGTTATTTGAAGTCCTGGACTTCGCTGGATGC
AATAAGAACATAACGGCCTGGAAATACTTGGCAAAGTATCTGAAGCAGATATTAGTGGGAAGCCATCACG
AGTGGGTTGAAGAAGAGTGGAAGTCTAGGAGGAACTGGTGGCCAGCTTTTCACTTCAGCTTCTTTTGGGC
GAAGAGTGACTGGAAGGCAGACACTGACTTGGCTTGTGAGAAAGCTTTTGTGGCAGGGGTCCTTTTAGGA
AAAGGTTGTAAATATTTTCGGTATATTTTAAAACAAGATCATGAAACCTTGAAGAAGAAAATCAAGCGAA
TGAAGAAGTCTGTGAAAAAATACACTATTGTAAATCCAGGTGTTCACACCTAGATTTTAACTTATTTTAC
AGTTATCGCTACAGTGTAGTGGTTCATTTACACATACACGCACTTGTGCACATGCGCATGTGGAAGCTAG
AAGTCAGCTGTGTCACTCGCTGCAGGAGCCTGGCTTTGAGACCCTCACTGAGACCTGGAGGAGGCGCTCG
GCCTCCCTCCCACCTGTTTGTTCCTCCACCAGCTTCATTTCCACACCCCACAGCTACTAATGGGTGCTGT
TGAGTGGGGGGTAGAGAGTCGAGGAGGAGGAGGAGGTGACACCATGTGACTCTCCAGTCCTTTGACTCTA
GAGGACTGATTTGAGTCAGAGTGCTAGAAGAGATGTGGTTGACCTTAAAGGCGTGGTGTGCTAGGATACT
TGGATGTTCCCTCAGAAATGAGAATCCAGCTGGGCGGTGGTGGCGCACGTCTTTAATCCCAGGAGGCAGA
GGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGAACAGCCAGGGCTACAC
AGAGAAAGCCCGTCTCAAAAAGAAACAAAGCAAAACAACAAAAAAAGGAGGCTCCAACAGTAGCATCTCT
ATCCATGAAGTAGCGTCCTGCAGGCACTGAGTAAGTAAGCACAGCGGGACAGCTTCCCAAGGCCAGAGAC
ACCCTGGGCTCTGTAGCTCATGTGCTGATGGGTGCTTCTAGAGAATGACCTTGGCTGCCTTGTAGTTATT
GTTAAAGTACTTGGATTCCAGGAAGGCTCACTGGGGCTCAGGAGACAAACCACACATTTCCTCATTGGCT
TATAGCCCTACTAGCTTTAAATAATGAACAATAAAAGTGGAAAAGTTGTGCTTTGTGATAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6595990 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template usi. T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6595990 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_006136 same experiment
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS