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EMAGE:30877

Epha7 Eph receptor A7 ( MGI:95276)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:30877 EMAGE:30877 EMAGE:30877 EMAGE:30877 EMAGE:30877
euxassay_008884_01 euxassay_008884_02 euxassay_008884_03 euxassay_008884_04 euxassay_008884_05
EMAGE:30877 EMAGE:30877 EMAGE:30877 EMAGE:30877 EMAGE:30877
euxassay_008884_06 euxassay_008884_07 euxassay_008884_08 euxassay_008884_09 euxassay_008884_10
EMAGE:30877 EMAGE:30877 EMAGE:30877 EMAGE:30877 EMAGE:30877
euxassay_008884_11 euxassay_008884_12 euxassay_008884_13 euxassay_008884_14 euxassay_008884_15
EMAGE:30877 EMAGE:30877 EMAGE:30877 EMAGE:30877
euxassay_008884_16 euxassay_008884_17 euxassay_008884_18 euxassay_008884_19

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
saccule
strong strong
regionalstrong expression: see section 05 06 07 08 15 16
hindlimb digit 5 mesenchyme
strong strong
regionalstrong expression: see section 09 moderate expression: see section 10
metanephros
strong strong
regionalstrong expression: see section 07 16 17 moderate expression: see section 08 15 weak expression: see section 09 14
hindlimb digit 4 mesenchyme
strong strong
regionalstrong expression: see section 09 moderate expression: see section 10
rest of cerebellum mantle layer
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 08 09 13 14 15 16 17 18 19
medulla oblongata alar plate mantle layer
moderate moderate
regionalmoderate expression: see section 06 07 08 09 12 13 14 15 16
trigeminal v nerve
moderate moderate
regionalmoderate expression: see section 10 16
lower jaw molar
moderate moderate
regionalmoderate expression: see section 07 08 17 18
upper jaw molar
moderate moderate
regionalmoderate expression: see section 08 17 18
hindlimb digit 3 mesenchyme
strong strong
regionalstrong expression: see section 09 moderate expression: see section 10
trigeminal v ganglion
moderate moderate
regionalmoderate expression: see section 05 06 07 08 09 16 17 18 19
upper lip
moderate moderate
regionalmoderate expression: see section 09 10 11 12 13 14 15 16 17 18
heart valve
moderate moderate
regionalmoderate expression: see section 12 13
telencephalon mantle layer
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 14 15 16 17 18 19
midbrain mantle layer
strong strong
regionalstrong expression: see section 06 07 08 09 10 11 12 13 14 15 16 17
eyelid
strong strong
regionalstrong expression: see section 01 02 03 04
lower lip
moderate moderate
regionalmoderate expression: see section 09 10 11 12 13 14 15 16 17 18
spinal cord mantle layer
moderate moderate
regionalmoderate expression: see section 07 08 09 10 11 12
hindlimb digit 1 mesenchyme
strong strong
regionalstrong expression: see section 09 moderate expression: see section 10
palatal shelf
strong strong
regionalstrong expression: see section 10 11 12 13 14 15
tongue
moderate moderate
regionalmoderate expression: see section 10 11 12 13 14 15 16
urethra of male
moderate moderate
regionalmoderate expression: see section 12 13 14
foot mesenchyme
strong strong
regionalstrong expression: see section 09 moderate expression: see section 10
hindlimb digit 2 mesenchyme
strong strong
regionalstrong expression: see section 09 moderate expression: see section 10
pons mantle layer
moderate moderate
regionalmoderate expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17
hypothalamus mantle layer
strong strong
regionalstrong expression: see section 08 09 10 11 12 13 14
medulla oblongata basal plate mantle layer
moderate moderate
regionalmoderate expression: see section 06 07 08 09 10 11 12 13 14 15
tail mesenchyme
moderate moderate
regionalmoderate expression: see section 16 weak expression: see section 12 13 14 15
diencephalon lateral wall mantle layer
strong strong
regionalstrong expression: see section 08 09 10 11 12 13 14 15 16
lower jaw incisor
moderate moderate
regionalmoderate expression: see section 12 15
upper jaw incisor
moderate moderate
regionalmoderate expression: see section 12 15 16
glans of male genital tubercle
strong strong
regionalstrong expression: see section 16 moderate expression: see section 12 14 15
lung
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7006
Entity Detected:Epha7, Eph receptor A7 ( MGI:95276)
Sequence:sense strand is shown

>T7006
CCACGCGTCCGCGGCCTGGGACCCAGAAGGGGATCGATGCGAGGAGCGCAATAATAACAACAATAATAAC
CCACTTCGGAGCAAACAGCATCTAAAGAGCTGCGACCCAACTGCAGCCTAAAAAAATCAAACCTGCTCAT
GCACCATGGTTGTTCAAACTCGGTTCCCTTCGTGGATTATTTTGTGTTACATCTGGCTGCTTGGCTTTGC
ACACACGGGGGAGGCGCAGGCTGCGAAGGAAGTACTATTACTGGACTCGAAAGCACAACAAACAGAATTG
GAATGGATTTCCTCTCCACCCAGTGGGTGGGAAGAAATTAGTGGTTTGGATGAGAACTACACTCCGATAA
GAACATACCAGGTGTGCCAGGTCATGGAGCCCAACCAGAACAACTGGCTGCGGACTAACTGGATTTCTAA
AGGCAACGCACAAAGGATTTTTGTAGAATTGAAATTCACCTTGAGGGATTGTAATAGTCTTCCCGGAGTC
CTGGGAACTTGCAAGGAAACGTTTAATTTGTACTATTATGAAACAGACTACGACACCGGCAGGAATATAC
GAGAAAACCTTTATGTTAAAATAGACACCATTGCTGCAGATGAAAGTTTCACACAAGGTGACCTTGGTGA
AAGAAAGATGAAGCTGAACACTGAGGTGAGAGAGATTGGACCTTTGTCCAAAAAGGGATTCTATCTTGCC
TTTCAGGATGTAGGGGCTTGCATAGCATTGGTTTCTGTCAAAGTGTACTACAAGAAGTGCTGGTCCATTG
TTGAGAACTTAGCTGTCTTTCCAGATACAGTGACTGGTTCGGAATTTTCGTCCTTAGTCGAGGTCCGTGG
GACATGTGTCAGCAGTGCCGAGGAAGAGGCAGAAAATTCCCCCAGGATGCATTGCAGTGCAGAAGGAGAG
TGGCTAGTACCCATTGGAAAATGCATCTGCAAAGCAGGCTATCAGCAAAAAGGGGACACTTGCGAACCCT
GTGGCCGCAGGTTCTACAAATCTTCCTCTCAGGATCTCCAGTGTTCTCGTTGTCCAACCCACAGCTTCTC
TGACCGAGAAGGATCATCCAGGTGTGAATGTGAAGATGGGTACTACAGAGCTCCTTCTGATCCACCATAC
GTTGCATGCACGAGGCCTCCCTCTGCACCACAGAACCTTATTTTCAACATCAATCAAACGACTGTAAGTT
TGGAATGGAGTCCTCCGGCTGACAACGGGGGAAGAAACGATGTCACCTACAGAATACTGTGTAAGCGGTG
CAGTTGGGAACAGGGAGAATGTGTGCCATGCGGAAGTAACATTGGATACATGCCCCAGCAGACAGGATTA
GAGGATAACTATGTCACTGTCATGGACCTACTTGCCCATGCAAATTACACTTTCGAAGTTGAAGCTGTAA
ATGGAGTTTCGGACTTAAGCAGATCCCAGAGGCTCTTCGCTGCAGTTAGCATCACTACCGGTCAAGCAGC
TCCCTCGCAAGTGAGTGGAGTCATGAAGGAGCGAGTACTGCAGCGGAGTGTGCAGCTTTCCTGGCAGGAG
CCGGAGCATCCCAATGGAGTCATCACCGAATATGAAATCAAGTATTATGAGAAAGATCAACGGGAAAGGA
CGTACTCAACACTCAAAACCAAGTCCACCTCCGCCTCCATTAATAATCTGAAACCGGGAACAGTGTATGT
GTTTCAGATCCGGGCGGTCACTGCTGCCGGTTATGGAAACTACAGCCCTAGGCTTGATGTTGCCACACTT
GAGGAAGCTTCAGGTAAAATGTTTGAAGCGACAGCAGTCTCCAGTGAACAGAATCCTGTCATCATAATTG
CTGTAGTGGCTGTAGCAGGGACCATCATCTTGGTGTTCATGGTGTTCGGCTTCATCATTGGAAGAAGGCA
CTGTGGTTATAGCAAGGCTGACCAAGAAGGGGATGAAGAACTCTACTTTCATTGCACCAAAACCTACATT
GACCCTGAAACCTATGAGGACCCAAATAGAGCTGTCCATCAATTCGCCAAGGAGCTAGATGCCTCCTGTA
TTAAAATTGAGCGTGTGATTGGTGCAGGAGAATTTGGAGAAGTTTGCAGTGGTCGTTTGAAACTTCCGGG
GAAGAGAGATGTTGCAGTGGCCATAAAAACCCTGAAAGTTGGTTACACAGAAAAACAAAGGAGGGACTTT
TTATGCGAAGCAAGCATCATGGGGCAATTTGACCACCCAAATGTCGTCCATTTGGAAGGGGTTGTTACAA
GAGGGAAGCCTGTCATGATTGTGATAGAGTTCATGGAGAATGGAGCCCTGGATGCATTTCTCAGGAAACA
CGATGGGCAGTTTACAGTCATTCAGTTGGTAGGAATGCTGAGAGGTATTGCCGCTGGGATGCGATACTTG
GCTGATATGGGATACGTTCACAGGGACCTTGCAGCACGCAACATCCTTGTCAACAGCAATCTTGTTTGTA
AAGTGTCAGATTTTGGCCTTTCCCGGGTTATAGAGGATGATCCCGAAGCTGTCTACACCACGACTGGTGG
AAAAATTCCAGTAAGGTGGACTGCACCGGAAGCCATTCAATACCGGAAGTTCACCTCAGCCAGCGATGTG
TGGAGCTATGGGATTGTCATGTGGGAAGTGATGTCTTATGGAGAAAGACCTTACTGGGACATGTCAAATC
AAGATGTCATTAAAGCGATAGAAGAAGGTTATCGTTTGCCGGCGCCCATGGATTGCCCAGCTGGTCTTCA
CCAGCTAATGCTGGATTGTTGGCAGAAAGATCGGGCGGAAAGGCCAAAGTTTGAGCAGATAGTCGGAATT
CTAGACAAAATGATTCGAAACCCAAGTAGTCTGAAAACACCCCTGGGAACTTGTAGTAGACCCATAAGCC
CTCTTCTGGACCAGAGCACTCCTGACTTCACTGCCTTCTGTTCAGTTGGAGAATGGTTGCAAGCTATTAA
AATGGAAAGGTATAAGGACAACTTCACAGCAGCGGGTTACAACTCACTCGAGTCAGTGGCCAGGATGACT
ATCGATGATGTGATGAGTTTAGGGATCACACTGGTTGGCCATCAAAAGAAGATCATGAGCAGCATCCAGA
CTATGCGGGCACAAATGTTGCATTTACACGGAACAGGCATCCAAGTGTGACACATCGGCCTCCCTCAGAT
GAGGCTTAAGACTGCAGGAGAACAGTTCTGGCCTTCAGTATACGCATAGAATGCTGCTAGAAGACAGTTG
ATATACTGGGTCCTTCCTACAAGAAAGAGAAGATTTTAGAAGCACCTCCAGACTTGAACTCCTAAGTGCC
ACCAGAATATACAAAAAGGGAATTTAGGATCCACCACTGGTGGCCAGGAACACAGCAGAGACAATAAACA
AAGTACTACCTGAAAAACATCCCAACACCTTGAGCTCTCGAACCTCCTTTTTATCTTATAGACTTTTTAA
AAATGTACATAAAGAATTTAAGAAAGAATATATTTGTCAAATAAAAATCATGATCTTATTGTTAAAATCA
ATGAAATATTTTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3991628 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3991628 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_008884 same experiment
 EMAGE:29422 same embryo
 EMAGE:29345 same embryo
 EMAGE:30644 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS