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EMAGE:31012

Ifi30 ( MGI:2137648)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31012 EMAGE:31012 EMAGE:31012 EMAGE:31012 EMAGE:31012
euxassay_001635_01 euxassay_001635_02 euxassay_001635_03 euxassay_001635_04 euxassay_001635_05
EMAGE:31012 EMAGE:31012 EMAGE:31012 EMAGE:31012 EMAGE:31012
euxassay_001635_06 euxassay_001635_07 euxassay_001635_08 euxassay_001635_09 euxassay_001635_10
EMAGE:31012 EMAGE:31012 EMAGE:31012 EMAGE:31012 EMAGE:31012
euxassay_001635_11 euxassay_001635_12 euxassay_001635_13 euxassay_001635_14 euxassay_001635_15
EMAGE:31012 EMAGE:31012 EMAGE:31012 EMAGE:31012 EMAGE:31012
euxassay_001635_16 euxassay_001635_17 euxassay_001635_18 euxassay_001635_19 euxassay_001635_20
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euxassay_001635_21 euxassay_001635_22 euxassay_001635_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
esophagus
weak weak
regionalweak expression: see section 11 12
submandibular gland primordium
weak weak
regionalweak expression: see section 03 09 17 18 19
thymus primordium
weak weak
regionalweak expression: see section 10 11 12 13 14 15
hindgut
moderate moderate
regionalmoderate expression: see section 11 12 13 14 15 16
liver
weak weak
regionalweak expression: see section 01
liver lobe
weak weak
regionalweak expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
foregut-midgut junction
moderate moderate
regionalmoderate expression: see section 15
stomach
moderate moderate
regionalmoderate expression: see section 02 03 04 09 10 11 weak expression: see section 01 05 06 07 08
orbito-sphenoid
moderate moderate
regionalmoderate expression: see section 01 05 06 07 08 21 22 23 weak expression: see section 19 20
midgut
moderate moderate
regionalmoderate expression: see section 11 12 13 14 15 16 17 18 19 20 21
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5660
Entity Detected:Ifi30, ( MGI:2137648)
Sequence:sense strand is shown

>T5660
GCTTTTTCCTCCGCAGCCATGTCCTGGTCTCCGATCCTACCATTTTTGTCCCTTCTGCTTCTGCTGTTCC
CACTCGAGGTTCCCAGAGCAGCCACTGCGTCCCTTTCGCAAGCATCCTCCGAAGGCACAACCACCTGCAA
GGTCCACGATGTGTGCCTCTTGGGGCCACGCCCATTGCCCCCTTCACCACCTGTCAGAGTCAGCCTGTAT
TATGAGTCCCTGTGTGGAGCTTGTCGCTACTTCCTCGTCCGGGATTTGTTCCCAACCTGGCTGATGGTGA
TGGAAATCATGAACATCACCCTGGTGCCCTACGGGAATGCACAGGAGAGAAATGTCAGCGGTACGTGGGA
GTTCACGTGCCAGCACGGGGAGCTGGAGTGTAGACTGAACATGGTGGAGGCCTGTCTGCTGGATAAGCTG
GAAAAGGAGGCAGCGTTCCTAACCATCGTCTGTATGGAGGAGATGGATGATATGGAGAAGAAACTGGGAC
CGTGCCTGCAGGTGTATGCTCCTGAGGTGTCACCAGAGAGTATCATGGAGTGCGCCACAGGAAAACGGGG
CACACAGCTCATGCATGAGAATGCCCAGCTCACAGATGCCCTACACCCACCCCACGAGTATGTGCCCTGG
GTGCTGGTCAATGAGAAACCTTTGAAGGACCCCAGCGAGCTCCTGAGCATAGTCTGTCAGCTGTACCAGG
GAACGGAGAAGCCAGACATCTGCTCCTCCATTGCCGACTCCCCCAGGAAGGTCTGCTATAAGTAAAGGCA
TAACCTCAAACTCGTCCCAGGAAAAACTGCCCAGCTTCTTCAAATTGCCAACCTGCAAGAGCTGCTGCCT
CGCTATGAAAACCTTGCACATGTCCCACAAAGCCCAGACTCCAGACTTCTCAGAGACAAGGATCTTGCCT
TATTTTCAAATGGTGCTAAATTTAAATTCATAGAATAAATCATCTATACTCCTGTGAAAAAAAAAAAAAA
AAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6528891 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6528891 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_001635 same experiment
 EMAGE:31638 same embryo
 EMAGE:31015 same embryo
 EMAGE:29303 same embryo
 EMAGE:29305 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS