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EMAGE:31037

Slc16a9 ( MGI:1914109)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31037 EMAGE:31037 EMAGE:31037 EMAGE:31037 EMAGE:31037
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
choroid invagination
strong strong
regionalstrong expression: see section 08 09 10 11 12 18 19 20 21
medulla oblongata part of 4th ventricle choroid plexus
strong strong
regionalstrong expression: see section 08 09 10 11 12 13 14 15 16 17 18 19 20
metencephalon part of 4th ventricle choroid plexus
strong strong
regionalstrong expression: see section 08 09 10 11 12 13 14 15 16 17 18 19 20
spinal cord meninges
strong strong
regionalstrong expression: see section 07 08 09 10 11 12 13 14 15 16
midbrain meninges
strong strong
regionalstrong expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
diencephalon meninges
strong strong
regionalstrong expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
telencephalon meninges
strong strong
regionalstrong expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
hindbrain meninges
strong strong
regionalstrong expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T1186
Entity Detected:Slc16a9, ( MGI:1914109)
Sequence:sense strand is shown

>T1186
CCTCGAGACTGTTGGCCTACTGGATATATTGCGCGCAGCGGGNACTGCTCGCCCAGCGCAGGGCCCGGAT
CAGCAGCTGCGGCCGGAGCTGCGCCCGCGGCCCCAGCCGAGGCCGGGACTCAGGGTCGTGAGCCTTCGGC
GAACCACCGCGTTGATTTCATCTCACAATGGAATTTCAGAAGTCACCTGACGGAGGGTGGGGCTGGGTGA
TTGTGGTTGTCTCCTTCTTCACCCAGTTCCTCTCTTACGGATCCCCGTTAGCTGTTGGGGTCTTGTATGT
AGAATGGCTGGATGCCTTCGGTGAAGGAAAAGGAAAAACAGCTTGGGTGGGATCCCTGGCGAGCGGAGTC
GGCTTGCTTGCAAGTCCTGTGTGCAGTCTCTTCGTCTCATCTTTTGGAGCAAGACCCGTCACAATCTTCA
GTGGCTTCCTGGTGGCTGGCGGTCTAATGCTGAGCAGTCTTGCCCCCAATATCTACTTTCTGTTTTTTTC
CTATGGCATCGTTGTAGGTCTCGGATGTGGCTTATTATACACAGCGACGGTGACCATCACATGCCA
Notes:The probe template was PCR amplified from IMAGE:2159694 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template usi. T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2159694 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_009116 same experiment
 EMAGE:29329 same embryo
 EMAGE:29310 same embryo
 EMAGE:29416 same embryo
 EMAGE:30973 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS