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EMAGE:31276

Kbtbd9 (Kbtbd9)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31276 EMAGE:31276 EMAGE:31276 EMAGE:31276 EMAGE:31276
euxassay_011122_01 euxassay_011122_02 euxassay_011122_03 euxassay_011122_04 euxassay_011122_05
EMAGE:31276 EMAGE:31276 EMAGE:31276 EMAGE:31276 EMAGE:31276
euxassay_011122_06 euxassay_011122_07 euxassay_011122_08 euxassay_011122_09 euxassay_011122_10
EMAGE:31276 EMAGE:31276 EMAGE:31276 EMAGE:31276 EMAGE:31276
euxassay_011122_11 euxassay_011122_12 euxassay_011122_13 euxassay_011122_14 euxassay_011122_15
EMAGE:31276 EMAGE:31276 EMAGE:31276 EMAGE:31276 EMAGE:31276
euxassay_011122_16 euxassay_011122_17 euxassay_011122_18 euxassay_011122_19 euxassay_011122_20
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euxassay_011122_21 euxassay_011122_22 euxassay_011122_23 euxassay_011122_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
medulla oblongata basal plate mantle layer
moderate moderate
regionalmoderate expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19
cerebral cortex marginal layer
moderate moderate
regionalmoderate expression: see section 02 03 04 05 06 07 08 09 10 11 12 14 15 16 17 18 19 20 21 22 23
trigeminal v ganglion
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 08 09 18 19 20 21 22 23
spinal cord mantle layer
moderate moderate
regionalmoderate expression: see section 11 12 13 14 15 16 17 18 19
telencephalon mantle layer
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
midbrain mantle layer
moderate moderate
regionalmoderate expression: see section 07 08 09 10 11 12 13 14 15 16 17 18 19
metencephalon rest of alar plate mantle layer
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20
diencephalon lateral wall mantle layer
moderate moderate
regionalmoderate expression: see section 07 08 09 10 11 14 15 16 17 18
medulla oblongata alar plate marginal layer
moderate moderate
regionalmoderate expression: see section 17
medulla oblongata alar plate mantle layer
moderate moderate
regionalmoderate expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 18 19
pons mantle layer
moderate moderate
regionalmoderate expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T36538
Entity Detected:Kbtbd9, (Kbtbd9)
Sequence:sense strand is shown

>T36538
CACTGAAATTCCGTTTCTCTCCTCATCTATCACACTGGAGCAAAACTGGCTATTTCTGTGAATGATATAA
AACAGGGTTCTCTGTAATGGTATTGTATATAGTATATGTTTATTGTTAAGTTGTTATATTATAATAAATA
TATTTATAGATCTAGACTCGGAAGCCAATGCAATGTCTTTGTGTGCCATTGTCTTTGCCTCAGTGACACT
ACAGTCCTGTTCTTCCTCTTGGTCATCAAGAGTGTGTATCCTTCTACAGATGTAGGTTTGGATGATTAGA
GAGGACCCTTTTGCAAAGGGACAGAGACAGATGAACGGTAACCTCCAGTAAGGAACAGCTGAAAGTCAAA
AGCCGACTTAGAGACTTAGAGATACCATGGAGTTGATGCAGCCTGTTCCCTGAGCTCCTATGTTCTTCTT
CTCACAGCATGTAAAAGCCCCACAGCTTGCTTTTGCCCCCTTCACTTCTGCCCAAAGGCCCCCTTTTCTT
ATTTTCTCAATTCATCAGCCTGGAGCTACAAGACACTTCCTCCAGGAAGAAAATCAGTGATTTCCATGCT
GAGACCCAGGCAGGGTAGCCTTCCTGCTTCCTCAGTTGTGTCTAAAGGGTTCTCTGGTCTATCACACAGA
CCCGCTTTGCCATGCCCAGGACACCTAGGCAAGACTGCTTAGCATGAAATACGGAAATGCATCTGTCAGG
AAGGAAGTTTAGGAAGAAAGGGTAGATTTTCCAGCATAGTCAGCCACATTAAGCCTCCATGTCCTCCATC
CCTAAATCGTACCAAGACCTAGTGTCTCCTTGAAAGCAAAACCTTAATAAGCAAAAACCAGCACAGGAGG
TGAGAGGAGAGGTTCTAC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 83626. Forward Primer - name:083626_F_cDNA_Kbtbd9, sequence:CACTGAAATTCCGTTTCTCTCC; Reverse Primer - name:083626_N_SP6_cDNA_Kbtbd9, sequence:GTAGAACCTCTCCTCTCACCTC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_011122 same experiment
 EMAGE:29939 same embryo
 EMAGE:31250 same embryo
 EMAGE:32227 same embryo
 EMAGE:32206 same embryo
 EMAGE:31249 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS