EMAGE mouse gene expression spatial database

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EMAGE:32088

4631416L12Rik ( MGI:1918053)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


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View assay images:
Expression pattern clarity:

Expression Pattern Description

Text Annotation:

Structure

Level

Pattern

Notes

pons ventricular layer

weak

regional

weak expression: see section 07 08 15 16 17

Annotation Validation:

text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T40239
Entity Detected:	4631416L12Rik, ( MGI:1918053)
Sequence:	sense strand is shown >T40239 CAGACGTGGTCCTCATTTATCAGCGTGTTGGCGATGGCTGGTATGAAGGGGAACGACTTCGAGATGGAGA GAGGGGCTGGTTTCCAATGGAATGTGCCAAGGAGATAACATGTCAAGCTACTATTGATAAGAATGTGGAG AGGATGGGACGATTGCTAGGACTGGAAACCAACGTGTAACCTCTCAGATGGCCAATAGAATGGAGACTTA ATATTACAGTTACTACAGTCTGCTTAATTAAAAGGATGGAAACACTTGCCTCTAAGCTTGCCAAGCCATT CTGCACTTTGGAAGAACAGCTACCAGATGCACTGAGTCCACAAAGCTCAGCTTTTGCATAATGATGCTCC TGAAAACATCTGCGTCCAAGGATGACAACAATTGTGGCTCCTACCATTTCCACTGTTTCCTAAGATGATG TATCTTGGCCTCTCTGTCCCCACTTCACTTAGACCATTGCTCTTCCGCATGAGTTTCTCCTTTGTATGGT CTCACAGCACCAGCAAGTTTGTCTTTGAGATTGTCCATTTTGTAAATACTTTTTGTGTCTTAGCCTAATG CTGTTAATTCCACAAGGAACTAATAGTAGTTCGGTAGGTGAGCTGTCATGTTTTGTAAACCTCTTTCTAC GAAAGGGAAATTGACACTTGAACTCTGCCACCATTTTCCTTAATAGAAGGAAGGTGAGGCACCACCTAGT GAGGATTTTTAAAAATCCATCTCATTCAATATTGTTCTTAGATAACTACAGCATTGCAACCTTAAGCTAC TAAAATGACATGGGATTTCCAGCTCACGTATGTGAGAACATCCTGAAGACAGGATATTATGGGTCAACTG CTAAAGAGCTGA
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 77212. Forward Primer - name:077212_F_cDNA_8430436L14Rik, sequence:CAGACGTGGTCCTCATTTATCA; Reverse Primer - name:077212_N_SP6_cDNA_8430436L14Rik, sequence:TCAGCTCTTTAGCAGTTGAC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_016114 same experiment
	EMAGE:30704 same embryo
	EMAGE:30490 same embryo
	EMAGE:30505 same embryo
	EMAGE:30702 same embryo
	EMAGE:30492 same embryo
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source