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EMAGE:4169

Hes6 hairy and enhancer of split 6 (Drosophila) ( MGI:1859852)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4169
Figure 2C. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(00)00443-3] Mech Dev 98: 133-7, Vasiliauskas D; Stern CD, Expression of mouse HES-6, a new member of the Hairy/Enhancer of split family of bHLH transcription factors Copyright 2000.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: Arrows indicate ectoderm. Arrowheads indicate subectoderm. Abbreviations: e, eye; n, olfactory placode; ov, otic vesicle; 1,2,3, 1st (geniculate), 2nd (petrosal), and 3rd (nodose) epibranchial placodes; V, trigeminal ganglion.
Expression Pattern Description
Spatial Annotation:
EMAGE:4169Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4169_wholemount_strong_3D_1.wlz
4169_wholemount_moderate_3D_1.wlz
4169_wholemount_weak_3D_1.wlz
4169_wholemount_possible_3D_1.wlz
4169_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4169_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
olfactory pit
detected detected
otocyst
detected detected
regionalExpression is in the anterior-ventral region.
central nervous system
detected detected
regionalExpression is in all neurogenic placodes.
mesenchyme
detected detected
regionalExpression is in cells adjacent to the neurogenic placodes.
lens pit
not detected not detected
homogeneous
optic stalk
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:236901
Entity Detected:Hes6, hairy and enhancer of split 6 (Drosophila) ( MGI:1859852)
Sequence:sense strand is shown

>MGI:236901
CGGGCTGCGACCCACCTCGCTGAGTAGTTTGCACTAGGGCGCCGGGCTCCGTAGACCATGGCTCCGTCCC
AGGCGCCCAGCCGGGACCGTGCAGGCCAGGAGGATGAGGACCGCTGGGAAGCACGGGGGGACCGCAAGCC
CGGAAGCCCCTGGTGGAGAAGAAGCGACGCGCACGGATCAACGAGAGTCTTCAGGAGCTGCGGCTGCTGC
TGGCCGGTACCGAGGTGCAGGCCAAGCTAGAGAACGCCGAGGTTCTGGAGCTGACCGTGAGGCGCGTGCA
GGGCCGCTGCGAGGCCGGGCGCCGAGCGGAGCAGCTGCAGGCTGAAGCAAGCGAGCGCTTCGCTGCTGGC
TACATCCAGTGCATGCATGAGGTGCACACGTTCGTGTCCACGTGCCAAGCCATCGATGCCACTGTCTCAG
CTGAA
Notes:The Hes6 probe used in this study by Vasiliauskas & Stern, 2000 [PMID:11044617] "was produced by transcription with T3 RNA polymerase using IMAGE clone 385069 (1.3 kb)".
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Vasiliauskas D & Stern CD, 2000 [PMID:11044617] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0925-4773(00)00443-3] [ PMID:11044617] Vasiliauskas D, Stern CD 2000 Expression of mouse HES-6, a new member of the Hairy/Enhancer of split family of bHLH transcription factors. Mech Dev (98):133-7
Links:MGI:2387000 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI