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EMAGE:4808

Cdh16 cadherin 16 ( MGI:106671)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:4808 EMAGE:4808 EMAGE:4808
Fig1D. [doi:10.1038/sj.emboj.7601421] Boutet A; De Frutos CA; Maxwell PH; Mayol MJ; Romero J; Nieto MA. 2006. EMBO J 25(23): 5603-13 Snail activation disrupts tissue homeostasis and induces fibrosis in the adult kidney. [PMID:17093497] © Nature Publishing Group. Reproduced with permission from EMBO J. Fig1E. [doi:10.1038/sj.emboj.7601421] Boutet A; De Frutos CA; Maxwell PH; Mayol MJ; Romero J; Nieto MA. 2006. EMBO J 25(23): 5603-13 Snail activation disrupts tissue homeostasis and induces fibrosis in the adult kidney. [PMID:17093497] © Nature Publishing Group. Reproduced with permission from EMBO J. Fig1F. [doi:10.1038/sj.emboj.7601421] Boutet A; De Frutos CA; Maxwell PH; Mayol MJ; Romero J; Nieto MA. 2006. EMBO J 25(23): 5603-13 Snail activation disrupts tissue homeostasis and induces fibrosis in the adult kidney. [PMID:17093497] © Nature Publishing Group. Reproduced with permission from EMBO J.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
(D) whole-mount mouse embryo and transverse sections taken at the mid (E) and posterior (F) trunk levels. Image annotations: nd - nephric duct epithelium, nt - neural tube, nm - nephrogenic mesenchyme.
Expression Pattern Description
Spatial Annotation:
EMAGE:4808Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
4808_wholemount__moderate.wlz
4808_wholemount__possible.wlz
4808_wholemount__notDetected.wlz
4808_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:4808_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
nephric duct
detected detected
regionalCadherin-16 is expressed in the newly formed nephric duct epithelium.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Cdh16 probeA
Entity Detected:Cdh16, cadherin 16 ( MGI:106671)
Sequence:sense strand is shown

>Cdh16 probeA
ACTGTAGAGATCTCCATAGTAGAGAACAGCTGGGCACCCCTAGAGCCTGTTCACCTGGCAGAGAATCTCA
AAGTTGTGTACCCACACAGCATTGCCCAGGTGCACTGGAGTGGAGGAGACGTGCACTACCAGCTGGAGAG
CCAGCCTCCAGGACCCTTCGATGTGGATACAGAGGGGATGCTCCATGTTACCATGGAGCTGGACCGGGAG
GCCCAGGCTGAGTACCAGCTCCAAGTCCGAGCTCAGAATTCCCATGGTGAGGACTACGCAGAACCCCTGG
AGTTGCAGGTGGTGGTGATGGATGAAAACGACAATGCACCTGTCTGCTCCCCACATGACCCAACAGTCAA
CATCCCTGAGCTCAGCCCCCCAGGAACTGAAATAGCCAGGCTCTCAGCAGAGGATTTGGATGCCCCTGGG
TCACCCAATTCCCACATTGTATATCAGTTGTTGAGCCCTGAGCCTGAGGAGGGGGCTGAAAACAAAGCCT
TCGAGTTAGATCCGACCTCAGGCAGTGTAACACTGGGAACTGCCCCACTCCATGCTGGCCAGAGTATCCT
GCTTCAGGTGCTGGCTGTTGACCTAGCAGGATCAGAGAGTGGCCTCAGCAGCACATGTGAGGTGACAGTC
ATGGTGACAGACGTCAACAACCATGCCCCTGAGTTCATCAATTCCCAGATTGGGCCTGTAACTCTTCCTG
AGGATGTAAAACCTGGGGCTCTGGTGGCAACACTCATGGCCACTGATGCTGACCTTGAACCTGCCTTCCG
CCTTATGGACTTTGCCATTGAAGAAGGAGACCCAGAAGGGATCTTTGACCTGTCCTGGGAGCCAGACTCC
GACCATGTCCAGCTCAGACTCCGGAAGAACCTCAGCTATGAGGCAGCTCCTGATCACAAGGTGGTGGTGG
TCGTGAGTAACATAGAAGAACTGGTGGGCCCAGGCCCAGGCCCTGCAGCCACAGCCACAGTGACTATACT
AGTGGAG
nt 815 - nt 1801 of NM_007663.2
Notes:The Cdh16 (Cad-16) probe template used in this study by Boutet et al., 2006 [PMID:17093497] is described as follows: "The mouse Cadherin-16 probe was obtained by RT-PCR from NMuMG cells cDNA using the primers (sense/antisense) 5'-ACTGTAGAGATCTCCATAGTA-3'/5'-CTCCACTAGTATAGTCACTGT-3'."
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Strain:BALB/c
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Boutet A; De Frutos CA; Maxwell PH; Mayol MJ; Romero J; Nieto MA, 2006 [PMID:17093497] , Indexed and Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1038/sj.emboj.7601421] [ PMID:17093497] Boutet A, De Frutos CA, Maxwell PH, Mayol MJ, Romero J, Nieto MA 2006 Snail activation disrupts tissue homeostasis and induces fibrosis in the adult kidney. EMBO J (25):5603-13
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE