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EMAGE:9309

Pafah1b1 platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 ( MGI:109520)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9309 EMAGE:9309 EMAGE:9309 EMAGE:9309 EMAGE:9309
"Pseudo-wholemount" of euxassay_017952. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017952_01 euxassay_017952_02 euxassay_017952_03 euxassay_017952_04
EMAGE:9309 EMAGE:9309 EMAGE:9309 EMAGE:9309 EMAGE:9309
euxassay_017952_05 euxassay_017952_06 euxassay_017952_07 euxassay_017952_08 euxassay_017952_09
EMAGE:9309 EMAGE:9309 EMAGE:9309 EMAGE:9309 EMAGE:9309
euxassay_017952_10 euxassay_017952_11 euxassay_017952_12 euxassay_017952_13 euxassay_017952_14
EMAGE:9309 EMAGE:9309 EMAGE:9309 EMAGE:9309 EMAGE:9309
euxassay_017952_15 euxassay_017952_16 euxassay_017952_17 euxassay_017952_18 euxassay_017952_19
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euxassay_017952_20 euxassay_017952_21 euxassay_017952_22 euxassay_017952_23 euxassay_017952_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9309Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9309_wholemount_strong.wlz
9309_wholemount_moderate.wlz
9309_wholemount_weak.wlz
9309_wholemount_possible.wlz
9309_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9309_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50855
Entity Detected:Pafah1b1, platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 ( MGI:109520)
Sequence:sense strand is shown

>T50855
ATAAGCTTGACATTACAGCCAAAATGGTGCTGTCCCAGAGACAACGAGATGAACTAAATCGAGCTATAGC
AGATTATCTTCGTTCAAATGGCTATGAAGAGGCATATTCCGTTTTTAAAAAGGAAGCTGAACTAGATATG
AATGAAGAATTAGATAAGAAGTATGCTGGTCTTTTGGAAAAAAAATGGACATCTGTTATTAGATTACAAA
AAAAGGTAATGGAATTAGAATCAAAACTAAATGAAGCAAAAGAAGAATTTACGTCGGGTGGTCCTCTTGG
TCAGAAACGGGACCCAAAAGAATGGATTCCCCGTCCACCTGAGAAATACGCATTGAGTGGTCATAGGAGT
CCAGTTACTCGAGTCATTTTCCATCCTGTGTTCAGTGTTATGGTCTCTGCTTCAGAGGATGCTACAATTA
AGGTGTGGGATTATGAGACTGGAGATTTTGAGCGAACTCTCAAGGGCCATACAGACTCTGTACAGGACAT
TTCCTTTGACCACAGTGGCAAGCTTCTGGCTTCCTGTTCAGCAGATATGACGATTAAATTATGGGATTTT
CAGGGTTTTGAATGCATCAGAACCATGCACGGTCACGATCACAATGTCTCTTCAGTAGCCATCATGCCTA
ATGGAGATCATATAGTGTCTGCCTCAAGGGATAAAACTATAAAGATGTGGGAAGTGCAAACTGGCTACTG
TGTGAAGACATTCACAGGACACAGAGAATGGGTACGTATGGTGCGGCCAAATCAGGATGGCACTCTGATA
GCCAGCTGTTCCAATGACCAGACTGTGCGTGTGTGGGTTGTAGCAACAAAGGAATGCAAGGCTGAGCTCC
GAGAACATGAACATGTGGTGGAATGCATTTCCTGGGCTCCAGAAAGTTCATATTCTTCCATCTCTGAAGC
AACAGGATCTGAGACTAAAAAAAGTGGCAAGCCTGGACCTTTCTTGCTATCTGGTTCCAGAGACAAAACT
ATTAAGATGTGGGACGTCAGTACTGGCATGTGCCTTATGACTCTTGTGGGTCATGATAACTGGGTACGTG
GAGTTCTGTTCCATTCTGGGGGGAAGTTTATTTTGAGTTGTGCTGATGACAAGACCCTCCGTGTATGGGA
TTATAAGAACAAGCGATGCATGAAGACCCTCAATGCGCATGAACACTTTGTTACCTCCTTGGATTTCCAT
AAGACGGCACCCTATGTGGTTACTGGCAGTGTAGATCAAACAGTAAAGGTGTGGGAGTGCCGTTGATTGA
GTCACATTTGGTTCTTCCTCCCTTTTTTCCTCTGGATGCACTCTGA
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:unspecified; Reverse Primer - name:unspecified, sequence:unspecified. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9308 same embryo
 EurExpress:euxassay_017952 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS