Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:9440

Szt2 seizure threshold 2 ( MGI:3033336)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9440 EMAGE:9440 EMAGE:9440 EMAGE:9440 EMAGE:9440
"Pseudo-wholemount" of euxassay_018222. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018222_01 euxassay_018222_02 euxassay_018222_03 euxassay_018222_04
EMAGE:9440 EMAGE:9440 EMAGE:9440 EMAGE:9440 EMAGE:9440
euxassay_018222_05 euxassay_018222_06 euxassay_018222_07 euxassay_018222_08 euxassay_018222_09
EMAGE:9440 EMAGE:9440 EMAGE:9440 EMAGE:9440 EMAGE:9440
euxassay_018222_10 euxassay_018222_11 euxassay_018222_12 euxassay_018222_13 euxassay_018222_14
EMAGE:9440 EMAGE:9440 EMAGE:9440 EMAGE:9440 EMAGE:9440
euxassay_018222_15 euxassay_018222_16 euxassay_018222_17 euxassay_018222_18 euxassay_018222_19
EMAGE:9440 EMAGE:9440 EMAGE:9440 EMAGE:9440 EMAGE:9440
euxassay_018222_20 euxassay_018222_21 euxassay_018222_22 euxassay_018222_23 euxassay_018222_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9440Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9440_wholemount_strong.wlz
9440_wholemount_moderate.wlz
9440_wholemount_weak.wlz
9440_wholemount_possible.wlz
9440_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9440_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50152
Entity Detected:Szt2, seizure threshold 2 ( MGI:3033336)
Sequence:sense strand is shown

>T50152
TCTGGAAGCGCCTATTCTTGCTGGAGCCACCAGGGCCTGACCGGCTAAGGCTTGGAGGGCGCCTGGCCCT
GGCAGAGCTGGAGGAGCTCTTAGAGGCAGTCCACGCCAAGTCCATTGCGGACATTGACCCCCAGCTGGAC
TGTTTCCTCTCCATGACGGTCTCCTGGTACCAGAGCCTCATCAAGGTTCTCCTGAGCCGATTCCCCCAGA
GCTGCCGCCATTTTCAGAGCCCAGACTTGGGAACCCAGTACCTGGTTGTGCTGAATCAGAAGTTCACCGA
CTGCTTTGTCTTGGTGTTTCTGGACTCACACCTGGGAAAGACGTCTCTGACGGTGGTTTTCCGAGAGCCC
TTCCCGGTGCAGCCCCAGGACAGTGAGAGCCCTCCTGCCCAGCTGGTCTCTACCTACCACCACTTGGAGT
CTGTCATCAACACAGCCTGTTTCACCCTCTGGACCCGCCTTCTCTGAGAAGTGGACCAGTGACTCTGTTG
ATTGAATCATGGATCTATAGGCTTGCCCGCTTGAGGCAGGACAGACTGGCACTTAGGAACCCCAGGGTAA
ACTCAGACACAGAATGACACTAAAGGACTGAGTATGTCTGGGAGAAGTGCTGCTACAGCCTGGCAACAGG
AACATAGCTGCTGAACAGCCCGGACTCGCCTCAGGCCCCTGGGCCTGTGCAGAAGAGGATGCCTCCTTCC
TGCACACCTGGTGGAGTGCCAGGGAATGTCACATGATCTGACAAGCTCTCACCTCTAAGAGCTCTGCCAC
TTGGCCATCACTGTTGGACATTACCATTGAGATAGACTTGGTTCCGATCTTGACTCGGCCTGTCAAGCAC
CTGTGACCAGTCTTACCTCCTCCCGTCCCCACTGGACCTTTGGTTCCTCATCTGTGGATAAGGAGGGCTC
AGAAGTCTC
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:TCTGGAAGCGCCTATTCTTG; Reverse Primer - name:unspecified, sequence:GAGACTTCTGAGCCCTCCT. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9437 same embryo
 EMAGE:9439 same embryo
 EMAGE:9441 same embryo
 EMAGE:9438 same embryo
 EurExpress:euxassay_018222 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS