Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:9588

Siah1b seven in absentia 1B ( MGI:108063)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9588 EMAGE:9588 EMAGE:9588 EMAGE:9588 EMAGE:9588
"Pseudo-wholemount" of euxassay_018694. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018694_01 euxassay_018694_02 euxassay_018694_03 euxassay_018694_04
EMAGE:9588 EMAGE:9588 EMAGE:9588 EMAGE:9588 EMAGE:9588
euxassay_018694_05 euxassay_018694_06 euxassay_018694_07 euxassay_018694_08 euxassay_018694_09
EMAGE:9588 EMAGE:9588 EMAGE:9588 EMAGE:9588 EMAGE:9588
euxassay_018694_10 euxassay_018694_11 euxassay_018694_12 euxassay_018694_13 euxassay_018694_14
EMAGE:9588 EMAGE:9588 EMAGE:9588 EMAGE:9588 EMAGE:9588
euxassay_018694_15 euxassay_018694_16 euxassay_018694_17 euxassay_018694_18 euxassay_018694_19
EMAGE:9588 EMAGE:9588 EMAGE:9588 EMAGE:9588 EMAGE:9588
euxassay_018694_20 euxassay_018694_21 euxassay_018694_22 euxassay_018694_23 euxassay_018694_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9588Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9588_wholemount_strong.wlz
9588_wholemount_moderate.wlz
9588_wholemount_weak.wlz
9588_wholemount_possible.wlz
9588_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9588_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T51004
Entity Detected:Siah1b, seven in absentia 1B ( MGI:108063)
Sequence:sense strand is shown

>T51004
CCATCCCAGAGGGTACCTGCCTTGACTGACACAACTGCATCCAACAATGACTTGGCGAGTCTTTTTGAGT
GTCCTGTCTGCTTTGACTATGTGTTGCCACCTATTCTTCAGTGTCAGAGTGGCCATCTTGTTTGTAGCAA
CTGTCGCCCCAAACTTACATGTTGTCCCACCTGCCGGGGCCCATTGGGATCCATTCGCAACTTGGCTATG
GAGAAAGTGGCCAACTCAGTACTCTTCCCCTGTAAATATTCCGCTTCTGGATGTGAAATAACTCTGCCAC
ACACCAAAAAGGCAGAGCACGAGGAGCTGTGTGAGTTCAGGCCTTACTCCTGCCCCTGCCCTGGTGCTTC
CTGTAAATGGCAAGGCTCCTTGGATGCTGTCATGCCCCACCTGATGCATCAGCACAAGTCCATTACCACC
CTGCAAGGAGAAGACATAGTTTTCCTTGCTACAGACATCAACCTTCCTGGTGCTGTTGACTGGGTGATGA
TGCAGTCTTGTTTTGGCTTTCATTTCATGTTAGTCTTGGAGAAACAGGAAAAATATGATGGTCATCAGCA
GTTCTTTGCAATTGTACAACTGATAGGAACACGCAAACAAGCTGAAAATTTTGCCTATCGACTTGAGCTA
AATGGTCATAGGCGCCGATTAACTTGGGAAGCGACTCCTCGATCTATTCATGAGGGGATTGCAACAGCCA
TTATGAATAGTGATTGCCTAGTGTTTGACACCAGCATTGCACAGCTTTTTGCAGAAAATGGTAATCTAGG
CATCAATGTAACTATTTCCATGTGTTGAAACGGCAATCAAATATTTCTGGCCAGTGTTTAAAATTTGCAT
TTGACTTCACAGAGAATAAGCCACCCATCTGCCTGCCAACCTAAAACATTCCTGGTAGGTAGAAGCTAGA
CATGA
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:TGGGAAGACCAGGTGTACAC; Reverse Primer - name:unspecified, sequence:TTTAGCTCAAGTCGATAGGC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9587 same embryo
 EMAGE:9586 same embryo
 EMAGE:9585 same embryo
 EMAGE:9584 same embryo
 EurExpress:euxassay_018694 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS