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EMAGE:9733

Snw1 SNW domain containing 1 ( MGI:1913604)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9733 EMAGE:9733 EMAGE:9733 EMAGE:9733 EMAGE:9733
"Pseudo-wholemount" of euxassay_018432. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018432_01 euxassay_018432_02 euxassay_018432_03 euxassay_018432_04
EMAGE:9733 EMAGE:9733 EMAGE:9733 EMAGE:9733 EMAGE:9733
euxassay_018432_05 euxassay_018432_06 euxassay_018432_07 euxassay_018432_08 euxassay_018432_09
EMAGE:9733 EMAGE:9733 EMAGE:9733 EMAGE:9733 EMAGE:9733
euxassay_018432_10 euxassay_018432_11 euxassay_018432_12 euxassay_018432_13 euxassay_018432_14
EMAGE:9733 EMAGE:9733 EMAGE:9733 EMAGE:9733 EMAGE:9733
euxassay_018432_15 euxassay_018432_16 euxassay_018432_17 euxassay_018432_18 euxassay_018432_19
EMAGE:9733 EMAGE:9733 EMAGE:9733 EMAGE:9733 EMAGE:9733
euxassay_018432_20 euxassay_018432_21 euxassay_018432_22 euxassay_018432_23 euxassay_018432_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9733Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9733_wholemount_strong.wlz
9733_wholemount_moderate.wlz
9733_wholemount_weak.wlz
9733_wholemount_possible.wlz
9733_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9733_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T51010
Entity Detected:Snw1, SNW domain containing 1 ( MGI:1913604)
Sequence:sense strand is shown

>T51010
ATACACTGACCTGGTTCCTAAGGAGGTTATGAATGCAGATGACCCAGACCTGCAACGGCCCGATGAAGAG
GCAATTAAAGAGATAACAGAAAAGACTAGAGTTGCCTTGGAGAAATCTGTGTCGCAGAAGGTTGCTGCAG
CCATGCCAGTTCGTGCAGCTGACAAGCTGGCTCCTGCTCAGTATATCCGCTACACACCATCTCAGCAAGG
AGTAGCATTCAATTCTGGAGCTAAACAGAGGGTCATTCGGATGGTAGAAATGCAGAAAGACCCAATGGAG
CCTCCAAGATTCAAGATTAATAAGAAAATTCCCCGGGGACCACCGTCTCCTCCTGCACCTGTAATGCACT
CTCCTAGTCGGAAGATGACTGTAAAGGAACAACAAGAGTGGAAGATCCCGCCTTGTATTTCCAACTGGAA
GAACGCTAAGGGGTATACGATCCCATTAGATAAACGGCTGGCTGCTGATGGAAGAGGACTTCAGACTGTC
CACATAAATGAAAATTTTGCCAAACTGGCTGAAGCGCTCTACATTGCTGATCGGAAGGCTCGTGAAGCGG
TGGAAATGCGAGCCCAGGTAGAGAGAAAGATGGCTCAAAAAGAAAAGGAGAAACATGAAGAGAAACTTAG
AGAAATGGCCCAGAAAGCCAGAGAAAGGAGAGCTGGAATCAAAACCCACGTGGAGAAAGAGGATGGAGAG
GCCCGTGAGAGAGATGAAATCCGTCATGACAGGCGAAAAGAGAGACAGCATGACCGGAACCTTTCCAGGG
CAGCTCCTGATAAGAGGTCAAAACTACAGAGAAATGAAAATCGAGACATCAGTGAAGTCATTGCTCTTGG
TGTGCCCAATCCTCGAACTTCCAATGAAGTTCAGTATGACCAAAGGCTCTTCAACCAATCC
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:unspecified; Reverse Primer - name:unspecified, sequence:unspecified. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_018432 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS