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EMAGE:9740

Ech1 enoyl coenzyme A hydratase 1, peroxisomal ( MGI:1858208)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9740 EMAGE:9740 EMAGE:9740 EMAGE:9740 EMAGE:9740
"Pseudo-wholemount" of euxassay_018434. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018434_01 euxassay_018434_02 euxassay_018434_03 euxassay_018434_04
EMAGE:9740 EMAGE:9740 EMAGE:9740 EMAGE:9740 EMAGE:9740
euxassay_018434_05 euxassay_018434_06 euxassay_018434_07 euxassay_018434_08 euxassay_018434_09
EMAGE:9740 EMAGE:9740 EMAGE:9740 EMAGE:9740 EMAGE:9740
euxassay_018434_10 euxassay_018434_11 euxassay_018434_12 euxassay_018434_13 euxassay_018434_14
EMAGE:9740 EMAGE:9740 EMAGE:9740 EMAGE:9740 EMAGE:9740
euxassay_018434_15 euxassay_018434_16 euxassay_018434_17 euxassay_018434_18 euxassay_018434_19
EMAGE:9740 EMAGE:9740 EMAGE:9740 EMAGE:9740 EMAGE:9740
euxassay_018434_20 euxassay_018434_21 euxassay_018434_22 euxassay_018434_23 euxassay_018434_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9740Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9740_wholemount_strong.wlz
9740_wholemount_moderate.wlz
9740_wholemount_weak.wlz
9740_wholemount_possible.wlz
9740_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9740_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50360
Entity Detected:Ech1, enoyl coenzyme A hydratase 1, peroxisomal ( MGI:1858208)
Sequence:sense strand is shown

>T50360
ACCGCGATGACAGTTTCCAGTAAACTCCGCGGCCTGCTGATGCAGCAGCTGAGAGGTACCAGCCAGCTGT
ACTTCAACATCAGCCTTCGATCTCTGAGCTCCTCTGCACAAGAGGCCTCCAAGAGAGCCCCCGAGGAAGT
CTCAGACCACAACTATGAGTCTATTCAAGTCACAAGTGCCCAGAAGCATGTTCTCCACGTGCAGCTAAAC
CGGCCAGAGAAGAGGAATGCCATGAACAGGGCTTTCTGGAGGGAGTTGGTGGAATGCTTCCAAAAGATAT
CCAAAGACTCGGACTGCCGGGCTGTTGTAGTCTCCGGTGCAGGAAAGATGTTCACTTCAGGTATTGACCT
CATGGACATGGCCTCCGAACTCATGCAGCCCTCAGGAGATGATGCGGCCCGCATAGCCTGGTACCTCCGT
GACCTCATCAGCAAGTACCAGAAGACCTTCACTGTCATTGAGAAGTGCCCCAAGCCAGTGATTGCTGCCA
TTCACGGAGGCTGCATTGGCGGAGGTGTGGACCTCGTTTCTGCCTGTGACATTCGCTACTGCACTCAGGA
TGCTTTTTTCCAGATCAAGGAGGTAGATATGGGCTTGGCTGCTGATGTAGGAACACTGCAGAGACTGCCC
AAGGTCATCGGGAACCAGAGCCTGGTCAACGAGCTGACCTTCTCTGCCCGCAAGATGATGGCTGACGAGG
CCCTGGACAGTGGGCTGGTCAGCCGCGTGTTCCAAGATAAGGACGCCATGCTGAATGCAGCCTTTGCCCT
GGCGGCTGATATTTCCAGCAAGAGCCCTGTGGCTGTGCAGGGGTCAAAAATCAATCTCATCTACTCCCGA
GACCATTCTGTGGACGAGAGCCTTGACTACATGGCCACCT
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:ACCGCGATGACAGTTTCCAG; Reverse Primer - name:unspecified, sequence:AGGTGGCCATGTAGTCAAGG. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_018434 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS