EMAGE mouse gene expression spatial database

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EMAGE:10905

Slc16a1 solute carrier family 16 (monocarboxylic acid transporters), member 1 ( MGI:106013)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003351. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003351_01	euxassay_003351_02	euxassay_003351_03	euxassay_003351_04

euxassay_003351_05	euxassay_003351_06	euxassay_003351_07	euxassay_003351_08	euxassay_003351_09

euxassay_003351_10	euxassay_003351_11	euxassay_003351_12	euxassay_003351_13	euxassay_003351_14

euxassay_003351_15	euxassay_003351_16	euxassay_003351_17	euxassay_003351_18	euxassay_003351_19

euxassay_003351_20	euxassay_003351_21	euxassay_003351_22	euxassay_003351_23	euxassay_003351_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10905_wholemount_strong.wlz

10905_wholemount_moderate.wlz

10905_wholemount_weak.wlz

10905_wholemount_possible.wlz

10905_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10905_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

axial musculature

moderate

regional

moderate expression: see section 03 04 05 20 21

thymus primordium

weak

homogeneous

weak expression: see section 11 12 13 14 15 16

submandibular gland primordium

strong

regional

strong expression: see section 09 10 11 17 18 19 20 moderate expression: see section 07 08

foregut-midgut junction

moderate

regional

moderate expression: see section 17 19 20

pancreas

weak

regional

weak expression: see section 12 13

epidermis

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

vibrissa

strong

regional

strong expression: see section 23 24

telencephalon marginal layer

moderate

regional

moderate expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

telencephalon meninges

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 17 18 19 20 21 22 23 24 weak expression: see section 12 13 14 15 16

olfactory cortex ventricular layer

moderate

regional

moderate expression: see section 18 19

telencephalon ventricular layer

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21

metencephalon rest of alar plate marginal layer

moderate

regional

moderate expression: see section 05 06 07 08 09 16 17 18 19 20 weak expression: see section 13 14 15

metencephalon rest of alar plate ventricular layer

moderate

regional

moderate expression: see section 05 06 07 08 09 16 17 18 19 20 21 weak expression: see section 10

midbrain ventricular layer

moderate

regional

moderate expression: see section 08 09 10 11 12 13 14 weak expression: see section 06 07 15

ventral grey horn

moderate

regional

moderate expression: see section 09 10 weak expression: see section 11 12 13 14 15 16 17

nasal cavity olfactory epithelium

moderate

regional

moderate expression: see section 10 11 12 13 19 20 21 weak expression: see section 18

nasal septum

moderate

regional

moderate expression: see section 14 15 16 weak expression: see section 17 18

hindgut

moderate

regional

moderate expression: see section 14 15 16 17 18 19 20 21

rectum

strong

regional

strong expression: see section 15

midgut

moderate

regional

moderate expression: see section 16 17 18 19 20 21 22

midgut loop

moderate

regional

moderate expression: see section 10 11 12 13 14 15 16 17 18 19 20 21

meckel's cartilage

moderate

regional

moderate expression: see section 03 04 05 23 24

lower jaw incisor

moderate

regional

moderate expression: see section 13 14 15 16 17 18

lower jaw molar

moderate

regional

moderate expression: see section 08 09 10 20 21

upper jaw incisor

moderate

regional

moderate expression: see section 13 14 15 18 19

upper jaw molar

moderate

regional

moderate expression: see section 08 09 10 20 21 22

liver lobe

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

renal capsule

strong

regional

strong expression: see section 08 09 10 11 12 19 20 21 22

maturing glomerular tuft

strong

regional

strong expression: see section 08 09 10 11 12 19 20 21 22

testis

moderate

regional

moderate expression: see section 07 08 09 10 22 23 24

left lung

strong

regional

strong expression: see section 04 05 06 07 08 09 10 11 12

right lung

strong

regional

strong expression: see section 13 14 15 16 17 18 19 20 21 22 23 24

clavicle

strong

regional

strong expression: see section 11 17

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6236
Entity Detected:	Slc16a1, solute carrier family 16 (monocarboxylic acid transporters), member 1 ( MGI:106013)
Sequence:	sense strand is shown >T6236 CGGACGCGTGGGCGGACGCGTGGGTGCGACGTGACTGGTCGGTCCTGTAGGTGCAGCAGCCAAGGAGCCC GGCGGCGGGCAGGGGACACGAGCGGGACCCCCCCGGCTCCGAGGAACTGCGGCCCTAGCCGCCGCGTCAC GCATACTCCGGGCGCCGCGAGACACACATAACGATACTAGATTTGCGCTGCATCTTGGAATTCATCTACA CTTAAAATGCCACCTGCGATTGGAGGGCCAGTGGGATACACCCCCCCAGATGGAGGCTGGGGGTGGGCAG TGTTAGTCGGAGCCTTCATTTCTATTGGCTTCTCCTATGCATTTCCCAAATCCATCACTGTCTTCTTTAA AGAGATAGAAGTTATATTCAGTGCAACGACCAGTGAAGTATCATGGATATCATCTATAATGTTGGCTGTC ATGTATGCTGGAGGTCCTATCAGCAGTATCTTGGTGAATAAATACGGCAGCCGTCCAGTAATGATCGCTG GTGGTTGTCTGTCTGGTTGCGGCTTGATCGCAGCTTCTTTCTGTAACACAGTACAGGAACTTTACTTGTG CATTGGTGTTATTGGAGGTCTTGGGCTTGCTTTCAACTTGAACCCAGCTCTGACTATGATTGGCAAGTAT TTCTACAAGAAGCGACCACTGGCCAACGGACTGGCCATGGCAGGCAGCCCTGTGTTCCTCTCTACCCTGG CTCCACTTAATCAGGCTTTCTTTGATATTTTTGACTGGAGAGGAAGCTTCCTAATTCTTGGGGGCCTCCT CCTAAATTGTTGTGTAGCTGGATCCCTGATGAGACCAATAGGGCCTGAGCAAGTCAAGCTAGAAAAACTC AAGTCCAAAGAATCTCTACAGGAAGCTGGAAAATCTGATGCAAATACAGATCTCATTGGAGGAAGTCCCA AAGGAGAAAAGCTGTCCGTCTTCCAAACAATTAACAAATTCCTGGACTTGTCGCTGTTTACCCATAGGGG CTTTTTACTGTACCTGTCTGGAAATGTGGTCATGTTTTTTGGACTCTTTACCCCTTTGGTCTTTCTTAGT AGTTATGGTAAGAGTAAGGATTTTTCCAGTGAGAAATCAGCCTTCCTTCTTTCCATTTTGGCTTTTGTTG ATATGGTAGCCAGACCGTCCATGGGACTTGCAGCCAACACCAAGTGGATCAGACCTCGGATCCAGTACTT TTTTGCTGCTTCTGTTGTTGCAAATGGAGTGTGCCATTTGCTTGCCCCTTTGTCTACAACCTACGTTGGG TTCTGTGTCTACGCCGGAGTCTTTGGATTTGCCTTTGGTTGGCTCAGCTCTGTATTATTTGAAACATTGA TGGACCTCATTGGACCCCAGAGGTTCTCCAGTGCTGTGGGCTTGGTGACCATTGTGGAATGCTGCCCTGT CCTCCTAGGGCCACCACTTTTAGGCCGCCTCAATGACATGTATGGAGACTACAAATACACGTACTGGGCT TGTGGCGTGATCCTCATCATCGCGGGTATCTATCTCTTCATTGGCATGGGCATCAACTATCGACTTCTTG CCAAAGAACAGAAAGCGGAGGAGAAGCAGAAAAGGGAAGGAAAAGAGGACGAGGCCAGCACCGATGTCGA CGAGAAGCCAAAGGAGACGATGAAAGCTGCACAGTCGCCGCAGCAGCACAGCTCCGGGGACCCCACAGAG GAGGAGAGCCCTGTCTGACCTGTGAAGCCTGGAGAGAGCAGCGTGTGACCCACGACATCCAAAACCATCC TGCTGGCCTCTAGTCTACCAGTGGTGCTCAGTGCAGACAGTGGACATTTGTGTGGAAAACCTACCGGGTG TTCATTGGTGGGATTTTTTTTTTCACTCCTTACCAATGCCTGAATTTAAAATATACTATGCTTTAGGTAG GGAGTGGTTGGCAAAGGATATGGGAAAGAAGTAGTGATTTTCTTTTTGTTTGTTTGTTTTGTTTTAATCT TAGCTTTTAACAGTGTCATGAAGATTATAATATGTGCCTTAAGTTTTAGTTTTTAGAACTCTTTAGAGAG CCTTAACTTTTAAAACCATTCTGCTGAATTCATTTGTTTTAAATGTCATTTTAAAAGGAAAAATAACAAC TAGCTTGCTTGAGGTAACTAACCTTAATCTTGTTTTGTTGTTGTTTGTAATGCTTTGTCAGACATTGTTA CTGGAACATTTATGAATAGAGGTATTGGTTAAAAGTCGCAGGTTTATAAAATACTGACTAAAGTATTTTT CTAGCATTATAGTTGCCTGGCATATCCACCTGCTAGGTATATATTTAAGAAATTTGAAACATAAAATTTT GGGAACATCTTGGCAGTTCCAGCCACAGCCTGTCACCTGCTGGGCACTTCTCAAATGCTTACTACAGCCT CGTGCTGAAGTGTTATCACTAAACTGTCACCTTTGCTCCTATTCAGAGACACTGAAATCAACTGCAAAAG GTTAGTATTAACATCTACAAAACAACTCTTTAACACGTCTGATTTAATGTATGCAGTATTTCAAGCAGCA GCTGAATTCAGTGTAGGTTTCCCCAAACCTTAGTTACGGTATGAGAATCTTAGGTATGTGTGGGTTTGAG GGGCTCTGAGGTGTTGGTTCTTAGGTTTGAACCCAGGGCCACAAGCATGCTAAGTGCATGCTGTACCACT GAGCCACAACCCACAGGCACCCTGGAATCCTTCTCCTTGACCCCTGAAACCTTTTCTCTTGGTTTTTGAT AGTTCCATTTATACCACTACTAGTTTAGAGCTGTATGTGGGATGATTCAGTACCGACTGAATGGATGTGC TTTTGTTTTTTTACATTGTTTTTCAGTATTTGCAAAACCACGAGGGTTAGAGTTTGGCCTCAGGGAAGCC AATAAAGATAAAATGGGAGGAAGTTTGCTGAGAACTTGTATCATGCTTACGATTATTTGACATAGTCTTA CCTCCACACCTTAACTTTCATGACCCTTTCACTCACCTGAAATGTAGAAAAATGGGTTCAGTGTAAGGAT AAGAGGAAAGATGGACCAGATTGGAACTACAGTGTTTTGGGTTTTTTTTTTTTTTTAACCTGATGTCTTC TGAATAGAGGCAGAAAAAAATAAGACATATGACACTGAATTGTACTCAATGTGTTTAAAATACCATTGTA ATTGACAGGGTGAATATAGATTTAAAACCTTGTGTAAGAAGCTGACTTTTTCCAAATAAAACATTTATTT TATTTTTAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3499773 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3499773 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10903 same embryo
	EMAGE:10902 same embryo
	EMAGE:10901 same embryo
	EMAGE:10906 same embryo
	EMAGE:10904 same embryo
	EurExpress:euxassay_003351 same experiment
	MGI:4828106 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source