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EMAGE:12734

Ift74 intraflagellar transport 74 homolog (Chlamydomonas) ( MGI:1914944)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:12734 EMAGE:12734 EMAGE:12734 EMAGE:12734 EMAGE:12734
"Pseudo-wholemount" of euxassay_011501. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_011501_01 euxassay_011501_02 euxassay_011501_03 euxassay_011501_04
EMAGE:12734 EMAGE:12734 EMAGE:12734 EMAGE:12734 EMAGE:12734
euxassay_011501_05 euxassay_011501_06 euxassay_011501_07 euxassay_011501_08 euxassay_011501_09
EMAGE:12734 EMAGE:12734 EMAGE:12734 EMAGE:12734 EMAGE:12734
euxassay_011501_10 euxassay_011501_11 euxassay_011501_12 euxassay_011501_13 euxassay_011501_14
EMAGE:12734 EMAGE:12734 EMAGE:12734 EMAGE:12734 EMAGE:12734
euxassay_011501_15 euxassay_011501_16 euxassay_011501_17 euxassay_011501_18 euxassay_011501_19
EMAGE:12734 EMAGE:12734 EMAGE:12734 EMAGE:12734
euxassay_011501_20 euxassay_011501_21 euxassay_011501_22 euxassay_011501_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:12734Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
12734_wholemount_strong.wlz
12734_wholemount_moderate.wlz
12734_wholemount_weak.wlz
12734_wholemount_possible.wlz
12734_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:12734_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
nasal cavity olfactory epithelium
weak weak
regionalweak expression: see section 09 10 11 15 16 17 18 19
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30379
Entity Detected:Ift74, intraflagellar transport 74 homolog (Chlamydomonas) ( MGI:1914944)
Sequence:sense strand is shown

>T30379
TCGTCCTGTGACCCAACAAGGTTTGAGTGGAATGAAGACTGGCATGAAAGGTCCCCAGAGGCAAATTTTA
GACAAATCTTACTATCTTGGACTTCTTAGGAGCAAAATAAGTGAACTTACAACTGAAATTAATAAGCTTC
AGAAAGAAATAGAAATGTACAACCAAGAAAATTCAGTGTATTTGTCATATGAAAAGAGGGCAGAGACATT
AGCTGTTGAAATTAAAGACTTTCAAGGACAACTAGCAGACTACAACATGTTGGTAGATAAACTTAATACC
AATACTGAAATGGAAGAAGTAATGAGTGATTACAACATGCTTAAAGCTCAAAATGACAGAGAAACACAAA
GTATGGATGTCATATTTACTGAAAGACAAGCGAAGGAAAAACAAATCAGAAGTGTAGAAGAAGAAGTTGA
ACAAGAAAAGCAAGCAGCAGATGG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:6313441), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 63419. Forward Primer - name:063419_F_IRAV102_a09_Ccdc2, sequence:TCGTCCTGTGACCCAACA; Reverse Primer - name:063419_R_SP6_IRAV102_a09_Ccdc2, sequence:GCCATCTGCTGCTTGCTT. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:12733 same embryo
 EMAGE:12737 same embryo
 EMAGE:12736 same embryo
 EMAGE:12735 same embryo
 EMAGE:12738 same embryo
 EurExpress:euxassay_011501 same experiment
 MGI:4825531 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS