EMAGE mouse gene expression spatial database

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EMAGE:12890

Trfr2 transferrin receptor 2 ( MGI:1354956)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_013605. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_013605_01	euxassay_013605_02	euxassay_013605_03	euxassay_013605_04

euxassay_013605_05	euxassay_013605_06	euxassay_013605_07	euxassay_013605_08	euxassay_013605_09

euxassay_013605_10	euxassay_013605_11	euxassay_013605_12	euxassay_013605_13	euxassay_013605_14

euxassay_013605_15	euxassay_013605_16	euxassay_013605_17	euxassay_013605_18	euxassay_013605_19

euxassay_013605_20	euxassay_013605_21	euxassay_013605_22	euxassay_013605_23	euxassay_013605_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12890_wholemount_strong.wlz

12890_wholemount_moderate.wlz

12890_wholemount_weak.wlz

12890_wholemount_possible.wlz

12890_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12890_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

liver lobe

weak

regional

weak expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

urinary system

weak

regional

weak expression: see section 05 06

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T31953
Entity Detected:	Trfr2, transferrin receptor 2 ( MGI:1354956)
Sequence:	sense strand is shown >T31953 GGCTTCCCGTCCTTCAATCAAACCCAGTTCCCTCCAGTAGAATCATCAGGCCTTCCCAGCATCCCCGCCC AGCCCATCAGTGCTGACATTGCTGATCAATTGCTCAGGAAACTCACAGGCCCCGTGGCTCCCCAGGAGTG GAAAGGTCACCTCTCAGGCTCTCCTTATCGGCTGGGACCTGGGCCCGACTTACGCCTTGTGGTCAACAAC CACAGAGTCTCTACCCCCATCAGTAACATCTTTGCGTGCATCGAGGGCTTTGCAGAGCCAGATCACTATG TTGTCATTGGGGCCCAGAGGGATGCATGGGGCCCAGGAGCAGCCAAGTCTGCAGTGGGGACTGCCATCCT GCTGGAGCTGGTTCGGACCTTCTCTTCCATGGTCAGCAATGGGTTCAGACCTCGAAGAAGTCTTTTGTTC ATCAGCTGGGACGGAGGTGACTTTGGCAGCGTGGGAGCCACAGAGTGGTTGGAGGGCTACCTCAGCGTGC TACACCTCAAAGCTGTTGTGTACGTGAGCCTGGACAACTCCGTGTTGGGAGATGGCAAATTCCATGCTAA GACCAGCCCCCTTCTCGTCAGCCTCATTGAGAATATCTTGAAGCAGGTGGACTCCCCTAACCATAGTGGA CAGACCCTCTATGAACAAGTGGCACTCACCCACCCCAGCTGGGATGCTGAAGTGATTCAGCCCCTGCCCA TGGACAGCAGTGCATATTCCTTCACAGCCTTTGCGGGGGTCCCAGCTGTGGAGTTCTCCTTCATGGAGGA TGATCGGGTGTACCCATTCCTGCACACGAAGGAGGACACATATGAGAATCTGCACAAGATGCTGCGAGGT CGCCTGCCCGCCGTGGTCCAGGCAGTGGCTCAGCTCGCGGGCCAGCTCCTCATCCGACTGAGCCACGATC ACCTACTGCCGC
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:4196597), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 18526. Forward Primer - name:018526_F_IRAV28-31_E09_Trfr2, sequence:GGCTTCCCGTCCTTCAAT; Reverse Primer - name:018526_R_SP6_IRAV28-31_E09_Trfr2, sequence:AGCGGCAGTAGGTGATCG. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12895 same embryo
	EMAGE:12894 same embryo
	EMAGE:12891 same embryo
	EMAGE:12893 same embryo
	EMAGE:12892 same embryo
	EurExpress:euxassay_013605 same experiment
	MGI:4828903 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source