EMAGE mouse gene expression spatial database

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EMAGE:14002

Tle1 transducin-like enhancer of split 1, homolog of Drosophila E(spl) ( MGI:104636)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001673. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001673_01	euxassay_001673_02	euxassay_001673_03	euxassay_001673_04

euxassay_001673_05	euxassay_001673_06	euxassay_001673_07	euxassay_001673_08	euxassay_001673_09

euxassay_001673_10	euxassay_001673_11	euxassay_001673_12	euxassay_001673_13	euxassay_001673_14

euxassay_001673_15	euxassay_001673_16	euxassay_001673_17	euxassay_001673_18	euxassay_001673_19

euxassay_001673_20	euxassay_001673_21	euxassay_001673_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

14002_wholemount_strong.wlz

14002_wholemount_moderate.wlz

14002_wholemount_weak.wlz

14002_wholemount_possible.wlz

14002_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:14002_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

pituitary gland

moderate

regional

moderate expression: see section 09 11 12 13 14 15

telencephalon mantle layer

moderate

regional

moderate expression: see section 01 02 03 05 06 07 08 09 11 14 15 16 17 18 19 20 21 22

metencephalon rest of alar plate ventricular layer

moderate

regional

moderate expression: see section 03 04 05 06 07 08 09 10 14 15 16 17 18 19 20

facial vii ganglion

weak

regional

weak expression: see section 04 19

glossopharyngeal ix ganglion

weak

regional

weak expression: see section 05 06 16 17

trigeminal v ganglion

weak

regional

weak expression: see section 02 03 04 05 06 07 16 17 18 19

vagus x ganglion

weak

regional

weak expression: see section 07

vestibulocochlear viii ganglion

weak

regional

weak expression: see section 05 06 07 16 17

dorsal root ganglion

moderate

regional

moderate expression: see section 08 09 15 16

not examined

regional

not examined expression: see section 01 02 20 21

neural retina

moderate

regional

moderate expression: see section 01 02 21 weak expression: see section 20

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T2702
Entity Detected:	Tle1, transducin-like enhancer of split 1, homolog of Drosophila E(spl) ( MGI:104636)
Sequence:	sense strand is shown >T2702 TGGCCTCGAGGCCAGATTCGGCACGAGGGGTTTTGATCCTCCTCCTCACATGAGAGTACCTTCTATCCCC CCCAACCTGGCAGGAATACCTGGAGGGAAACCAGCATACTCCTTCCACGTTACTGCTGATGGCCAAATGC AGCCTGTTCCTTTTCCCCCTGATGCCCTCATTGGACCTGGGATTCCCCGACATGCTCGGCAGATCAACAC CCTCAACCACGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGC AAGGGCTGCGTTAAGGTGTGGGACATCAGCCACCCCGGCAACAAGAGCCCCGTCTCTCAGCTGGATTGTC TGAATAGAGATAACTACATCCGTTCCTGTAAATTGCTACCTGATGGCTGTACTCTCATAGTGGGAGGGGA AGCCAGTACTCTATCCATCTGGGACTTGGCAGCTCCAACTCCCCGCATAAAGGCAGAGCTGACATCCTCA GCCCCTGCCTGTTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGTGACGGCA ACATCGCAGTGTG
Notes:	The probe template was PCR amplified from IMAGE:1512304 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1512304 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:14001 same embryo
	EMAGE:14000 same embryo
	EMAGE:14004 same embryo
	EMAGE:14003 same embryo
	EMAGE:14005 same embryo
	EurExpress:euxassay_001673 same experiment
	MGI:4828733 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source