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EMAGE:3235

Snai2 snail homolog 2 (Drosophila) ( MGI:1096393)
TS12 (8.5 dpc)
in situ hybridisation

Data Images
EMAGE:3235 EMAGE:3235
Fig2K of Sefton et al, 1998 [PMID:9671584] . Copyright: This image is from Sefton, et al., Development 125:3111-3121. (1998), and is displayed with the permission of The Company of Biologists Limited who owns the Copyright. Fig2I of Sefton et al, 1998 [PMID:9671584] . Copyright: This image is from Sefton, et al., Development 125:3111-3121. (1998), and is displayed with the permission of The Company of Biologists Limited who owns the Copyright.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Image annotations: nc, neural crest; s, somites.
Expression Pattern Description
Spatial Annotation:
EMAGE:3235Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
3235_wholemount_strong_3D_1.wlz
3235_wholemount_moderate_3D_1.wlz
3235_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:3235_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
head mesenchyme derived from neural crest
detected detected
single cellTranscripts were observed in migrating neural crest cells but not in the premigratory neural crest
future spinal cord neural crest
not detected not detected
homogeneousTranscripts were observed in migrating neural crest cells but not in the premigratory neural crest.
head somite
detected detected
homogeneousTranscripts were detected in the whole of the somite
trunk somite
detected detected
homogeneousTranscripts were detected in the whole of the somite
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1328415
Entity Detected:Snai2, snail homolog 2 (Drosophila) ( MGI:1096393)
Sequence:sense strand is shown

>MGI:1328415
ATGCCGCGCTCCTTCCTGGTCAAGAAACATTTCAACGCCTCCAAGAAGCCCAACTACAGCGAACTGGACA
CACACACAGTTATTATTTCCCCATATCTCTATGAAAGTTACCCTATACCTGTCATACCAAAACCAGAGAT
CCTCACCTCGGGAGCATACAGCCCTATTACTGTATGGACATCGTCGGCAGCTCCACTCCACTCTCCTCTA
CCCAGTGGCCTTTCTCCTCTTACTGGATACTCCTCATCCTTGGGGCGTGTAAGTCCCCCGCCTTCCTCTG
ACACTTCATCCAAGGATCACAGTGGTTCAGAAAGTCCCATTAGTGACGAAGAGGAGAGACTGCAGCCCAA
GCTTTCAGACCCCCATGCCATCGAAGCTGAGAAGTTTCAGTGCAATTTATGCAATAAGACCTATTCTACG
TTCTCTGGGCTGGCCAAACACAAGCAGCTGCACTGTGATGCCCAGTCTAGGAAATCGTTCAGCTGCAAGT
ACTGTGACAAGGAATATGTGAGCCTGGGTGCCCTGAAGATGCACATTCGAACCCACACATTGCCTTGTGT
CTGCAAGATCTGTGGCAAGGCTTTCTCCAGACCCTGGCTGCTTCAAGGACACATTAGAACTCACACTGGG
GAAAAGCCTTTCTCTTGCCCTCACTGCAATAGGGCTTTTGCAGACAGATCAAACCTGAGGGCACATCTGC
AGACCCACTCTGATGTAAAGAAATACCAGTGCAAAAACTGCTCCAAAACCTTCTCCAGAATGTCGCTTCT
GCATAAACATGAGGAGTCTGGCTGCTGTGTGGCACAC
nt 1 - nt 807 of U97059.1
Notes:The Snai2 (slug/mSlu) probe used in this study by Sefton et al, 1998 [PMID:9671584] is described as "nucleotides 1-807 (complete coding sequence)". U97059 corresponds to the accompanying GenBank sequence submission.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:either: BALB/c or SJL
Age:8.5 dpc
Theiler Stage:TS12
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Sefton M; Sanchez S; Nieto MA, 1998 [PMID:9671584] . Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:9671584] Sefton M, Sanchez S, Nieto MA 1998 Conserved and divergent roles for members of the Snail family of transcription factors in the chick and mouse embryo. Development (125):3111-21
Links:MGI:1328417 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI