EMAGE mouse gene expression spatial database

EMAGE:3737

Sorbs3 sorbin and SH3 domain containing 3 ( MGI:700013)
TS16 (10 dpc)
in situ hybridisation

Data Images


Figure 2A. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(01)00421-X] Mech Dev 106: 147-50, Kawauchi T; Ikeya M; Takada S; Ueda K; Shirai M; Takihara Y; Kioka N; Amachi T, Expression of vinexin alpha in the dorsal half of the eye and in the cardiac outflow tract and atrioventricular canal. Copyright 2001.

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Expression Pattern Description

Spatial Annotation:

Annotation colour key:

wholemount mapping

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Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

eye

detected

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	MGI:2183784
Entity Detected:	Sorbs3, sorbin and SH3 domain containing 3 ( MGI:700013)
Sequence:	sense strand is shown >MGI:2183784 GTGAAGGGGGATGGCCAGGATTCTTGGAGTGGGAAGATCTTCAGCTTCGTCTTTGAACAACAAAGAAGAC AATGAAAGTGATGTAGCCCTTCTTAGTCCCAAGGACCCTAACAGAGTACACACGAAGGAGCAGCTGGCAC ATCCTGCGTCCTCCAACCTTGACCCAAGCATGCAAGGCCTCCCTGCTGGGCTCAGCCTGGATGATTTCAT CCCTGGTCACCTCCGAACCCATATAGGCTCATCCTCCCGGGGGACAAGGGTGCCAGTGATCCGGAATGGT GGCTCCAACACCCTTAATTTCCAGTTTCATGACCCTGCGCCCAGGACTGTGTGCAATGGCTGCCCCCCAC CCAGGAGAGATGGTTCCTTGAATCCAGACCCAGCATGGTATCAGACCTGGCCAGGCCCTGGGAGCCGGCC CTCTATGAGCCCGAAGCCACCTGCTTCCCAGCATGCCCAGAACTGGTCAGCCACATGGACCAAGGACAGC AAGCGACAGGACAAGCGCTGGGTGAAGTACGAGGGAATCGGGCCCGTGGATGAGAGCGGCATGCCCATTG CCCCCCGATCTAGTGTTGACAGCCCCAGAGACTGGTATCGAAGAATGTTCCAGCAAATTCACCGGAAAAT GCCAGACCTGCAGCTGGACTGGACCTTGGAAGACCCACCCAAAGTGGTTTCCGCACGCGCCTCTTCTGCA GAACCCAGGCATCTAGGGACCCTGCAAAGACCTGCCTCCAGGCCTGGCACAACTGAGACTTCTAGCGGAA GAAACTGGAACCACTCTGAAGAGACAT
	nt 1 - nt 797 of AF064806.1
Notes:	The Sorbs3 (vinexin) probe used in this study by Kawauchi et al., 2001 [PMID:11472845] was described as a "812 bp EcoRI-XbaI fragment of N-terminus of mouse vinexin a cDNA (Kioka et al., 1999 [PMID:9885244] , AF064806.1)". This probe is specific to the alpha isoform. Editors Note: XbaI cuts AF064806.1 at position 797 whereas EcoRI does not cut AF064806.1, therefore the EcoRI site is presumed to be in the multiple cloning site at the 5' end of the insert.
Chemistry:	RNA
Strand:	antisense

Specimen

Procedures

Fixation:

4% paraformaldehyde

General Information

Authors:	Kawauchi T; Ikeya M; Takada S; Ueda K; Shirai M; Takihara Y; Kioka N; Amachi T, 2001 [PMID:11472845] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ doi:10.1016/S0925-4773(01)00421-X] [ PMID:11472845] Kawauchi T, Ikeya M, Takada S, Ueda K, Shirai M, Takihara Y, Kioka N, Amachi T 2001 Expression of vinexin alpha in the dorsal half of the eye and in the cardiac Mech Dev (106):147-50
	[ doi:10.1083/jcb.144.1.59] [ PMID:9885244] Kioka N, Sakata S, Kawauchi T, Amachi T, Akiyama SK, Okazaki K, Yaen C, Yamada KM, Aota S 1999 Vinexin: a novel vinculin-binding protein with multiple SH3 domains enhances actin cytoskeletal organization. J Cell Biol (144):59-69
Links:	MGI:2183832 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source