EMAGE mouse gene expression spatial database

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EMAGE:4360

Trmt2a TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) ( MGI:96270)
TS16 (10/10.5 dpc)
in situ hybridisation

Data Images


Figure 1L. Copyright: This image is from Maynard TM, Proc Natl Acad Sci U S A 2003 Nov 25;100(24):14433-8. Copyright 2003 National Academy of Sciences, U.S.A.

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

EMAGE:4360

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

4360_wholemount_strong_3D_1.wlz

4360_wholemount_moderate_3D_1.wlz

4360_wholemount_possible_3D_1.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:4360_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

two stars

Text Annotation:

Structure

Level

Pattern

Notes

branchial arch

detected

Also seen in ventral midline structures.

forelimb bud

detected

Also seen in ventral midline structures.

heart

detected

Also seen in ventral midline structures.

future forebrain

detected

Also seen in ventral midline structures.

fronto-nasal process

detected

Also seen in ventral midline structures.

arterial system

detected

Authors report expression in aortic arches.

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	MGI:3028121
Entity Detected:	Trmt2a, TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) ( MGI:96270)
Notes:	The Htf9c probe used in this study by Maynard et al., 2003 [PMID:14614146] is of unreported sequence.
Chemistry:	RNA
Strand:	antisense

Specimen

Organism:	mouse
Strain:	ICR
Age:	10/10.5 dpc
Theiler Stage:	TS16
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

Fixation:

2.5% paraformaldehyde

General Information

Authors:	Maynard TM; Haskell GT; Peters AZ; Sikich L; Lieberman JA; LaMantia AS, 2003 [PMID:14614146] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ doi:10.1073/pnas.2235651100] [ PMID:14614146] Maynard TM, Haskell GT, Peters AZ, Sikich L, Lieberman JA, LaMantia AS 2003 A comprehensive analysis of 22q11 gene expression in the developing and adult brain. Proc Natl Acad Sci U S A (100):14433-8
Links:	MGI:3028327 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source