Anatomy Intersect Analysis of analysis and expression data domains mapped to a common spatial model The intersection volumes calculated for each stage are normalised by the expression volume i.e row normalised Anatomy EMA36_forelimb_R_proximal EMA53_forelimb_R_proximal EMA118_forelimb_R_proximal Name forelimb_bud_right_proximal forelimb_R_proximal forelimb_R_proximal Comment forelimb right proximal forelimb right proximal Stage ts15 ts17 ts19 Model EMA:36 EMA:53 EMA:118 Volume 35126 40343 59696 Anatomy dir AnatomyDomains Exp data dir ExpressionData Roho dir ROHO_Domains Working dir /Users/richard/Projects/Wnt3DAnalysis/3D_DomainAnalysis Date & Time Mon 12 Jun 2017 19:15:40 BST Name Type EMA:36 Vol EMA:53 Vol EMA:118 Vol EMA:36 Anatomy Intersect Vol EMA:53 Anatomy Intersect Vol EMA:118 Anatomy Intersect Vol diencephalon Anatomy 222695 543756 369524 0.000000 0.000000 0.000000 diencephalon_floorplate Anatomy 11662 59255 17524 0.000000 0.000000 0.000000 embryo Anatomy 8195342 14409122 14566780 0.004286 0.002800 0.004098 eye Anatomy 75652 56705 58829 0.000000 0.000000 0.000000 forelimb_bud_left Anatomy 79116 256888 260263 0.000000 0.000000 0.000000 forelimb_bud_left_aer Anatomy 3323 9697 4911 0.000000 0.000000 0.000000 forelimb_bud_left_pz_distal Anatomy 24183 26687 18455 0.000000 0.000000 0.000000 forelimb_bud_left_anterior Anatomy 10770 44917 27972 0.000000 0.000000 0.000000 forelimb_bud_left_posterior Anatomy 8225 44549 31299 0.000000 0.000000 0.000000 forelimb_bud_left_proximal Anatomy 32621 76404 56381 0.000000 0.000000 0.000000 forelimb_bud_right Anatomy 82967 228175 223483 0.423373 0.157318 0.184282 forelimb_bud_right_aer Anatomy 1640 12095 4474 0.000000 0.000000 0.000000 forelimb_bud_right_pz_distal Anatomy 25410 40722 21236 0.000000 0.000000 0.000000 forelimb_bud_right_anterior Anatomy 8556 31434 30014 0.000000 0.000000 0.000000 forelimb_bud_right_posterior Anatomy 12235 46007 42494 0.000000 0.000000 0.000000 forelimb_bud_right_proximal Anatomy 35126 40343 59696 1.000000 1.000000 1.000000 heart Anatomy 580989 838272 538400 0.000000 0.000000 0.000000 hyoid_arch Anatomy 95101 163744 138545 0.000000 0.000000 0.000000 liver Anatomy 22096 88757 271927 0.000000 0.000000 0.000000 mandibular_arch Anatomy 176876 362151 556918 0.000000 0.000000 0.000000 maxillary_process Anatomy 188595 264736 266405 0.000000 0.000000 0.000000 mesencephalon Anatomy 196553 368645 342981 0.000000 0.000000 0.000000 hindbrain Anatomy 403580 857645 860924 0.000000 0.000000 0.000000 neural_tube Anatomy 684427 1285604 895693 0.000000 0.000000 0.000000 olfactory_placode Anatomy 38900 596878 425728 0.000000 0.000000 0.000000 otic_pit Anatomy 46290 65830 63379 0.000000 0.000000 0.000000 rathkes_pouch Anatomy 3930 13613 11868 0.000000 0.000000 0.000000 tail_bud Anatomy 85902 100011 68754 0.000000 0.000000 0.000000 telencephalon Anatomy 190477 419203 475856 0.000000 0.000000 0.000000 Fzd1 Fzd 55717 515619 1669960 0.010356 0.001581 0.004237 Fzd10 Fzd 361155 3644620 2309825 0.004070 0.002180 0.001649 Fzd3 Fzd 1452829 3793904 4266743 0.000360 0.001436 0.001707 Fzd4 Fzd 220653 157650 1002988 0.000621 0.000032 0.002110 Fzd6 Fzd 467530 3228769 5599048 0.000558 0.002534 0.003662 Fzd7 Fzd 1317077 2263985 1958064 0.012148 0.001212 0.009301 Fzd8 Fzd 1878738 2742695 3709042 0.008345 0.002495 0.013595 Fzd9 Fzd 509261 327569 997392 0.001269 0.000000 0.000897 Wnt1 Wnt 149998 154892 249188 0.000000 0.000000 0.000000 Wnt10A Wnt 39337 413643 201041 0.000025 0.001342 0.000010 Wnt10B Wnt 1113937 51179 344482 0.005139 0.032865 0.003373 Wnt11 Wnt 144790 3196672 845164 0.037613 0.011533 0.020064 Wnt16 Wnt 494292 463013 2294990 0.002782 0.000270 0.000874 Wnt2 Wnt 407998 981554 1651397 0.000012 0.000003 0.000994 Wnt2B Wnt 94349 51084 1791285 0.001219 0.000000 0.001338 Wnt3 Wnt 268085 1028642 800829 0.009154 0.002090 0.002288 Wnt3A Wnt 577919 377281 2064596 0.003751 0.000000 0.002117 Wnt4 Wnt 695384 592591 2283324 0.003339 0.000327 0.003056 Wnt5A Wnt 1028283 429701 2886105 0.006723 0.000000 0.007081 Wnt5B Wnt 186671 17485 1617412 0.001532 0.000000 0.006638 Wnt6 Wnt 507024 1236140 381346 0.013918 0.003938 0.008769 Wnt7A Wnt 2913315 884601 2176434 0.009550 0.000023 0.001261 Wnt7B Wnt 1526898 1173183 2252902 0.004275 0.000435 0.002189 Wnt8A Wnt 0 143251 1951749 0.000000 0.000433 0.004599 Wnt8B Wnt 44253 108590 289876 0.000655 0.000000 0.000000 Wnt9A Wnt 0 271095 1332618 0.000000 0.000221 0.000137 Wnt9B Wnt 197551 83024 867257 0.004014 0.000132 0.002200 EMA36_Fzd10_Only Fzd_Occupancy 63980 482924 303671 0.000891 0.002603 0.002249 EMA36_Fzd1_Only Fzd_Occupancy 15756 235708 56455 0.001904 0.000509 0.001736 EMA36_Fzd3_Only Fzd_Occupancy 549937 905757 412051 0.000167 0.001067 0.000990 EMA36_Fzd4_Only Fzd_Occupancy 87709 17141 272362 0.000262 0.000292 0.000231 EMA36_Fzd6_Only Fzd_Occupancy 152788 327728 1123999 0.000275 0.001269 0.000834 EMA36_Fzd7_Only Fzd_Occupancy 505949 284715 137533 0.011060 0.000306 0.006937 EMA36_Fzd8_Only Fzd_Occupancy 828387 302446 559400 0.006026 0.006276 0.040057 EMA36_Fzd9_Only Fzd_Occupancy 175338 63176 25639 0.000616 0.000000 0.000000 FzdOccDomain_t00E Fzd_Occupancy 4152222 7069763 5347834 0.003165 0.003617 0.000763 FzdOccDomain_t01E Fzd_Occupancy 2379844 2773096 2969676 0.004597 0.001714 0.008612 FzdOccDomain_t02E Fzd_Occupancy 1199803 1784412 2585286 0.007517 0.002541 0.005864 FzdOccDomain_t03E Fzd_Occupancy 378572 1254946 1809661 0.004742 0.003095 0.004384 FzdOccDomain_t04E Fzd_Occupancy 77031 960485 1010957 0.002869 0.001569 0.004656 FzdOccDomain_t05E Fzd_Occupancy 7554 433889 577643 0.001191 0.000219 0.002249 FzdOccDomain_t06E Fzd_Occupancy 312 106791 218711 0.000000 0.000019 0.002464 FzdOccDomain_t07E Fzd_Occupancy 4 24686 43348 0.000000 0.000000 0.006898 Tcf_GFP Readout 1401041 2166894 3228445 0.000148 0.004585 0.005743 EMA36_Wnt10A_Only Wnt_Occupancy 4683 136753 8811 0.000000 0.000161 0.000000 EMA36_Wnt10B_Only Wnt_Occupancy 286167 6904 36780 0.000542 0.005794 0.000163 EMA36_Wnt11_Only Wnt_Occupancy 40002 2015976 82567 0.001350 0.015235 0.046919 EMA36_Wnt16_Only Wnt_Occupancy 152532 241261 268566 0.000046 0.000000 0.002673 EMA36_Wnt1_Only Wnt_Occupancy 17200 43648 16444 0.000000 0.000000 0.000000 EMA36_Wnt2B_Only Wnt_Occupancy 11719 3725 303614 0.000427 0.000000 0.000300 EMA36_Wnt2_Only Wnt_Occupancy 199622 532513 615415 0.000000 0.000000 0.000249 EMA36_Wnt3A_Only Wnt_Occupancy 60258 87316 261548 0.000000 0.000000 0.001193 EMA36_Wnt3_Only Wnt_Occupancy 29896 308358 21632 0.003713 0.000448 0.007119 EMA36_Wnt4_Only Wnt_Occupancy 135183 148959 130634 0.000969 0.000054 0.010311 EMA36_Wnt5A_Only Wnt_Occupancy 178991 135138 399947 0.001643 0.000000 0.011697 EMA36_Wnt5B_Only Wnt_Occupancy 20981 3755 595272 0.000000 0.000000 0.007296 EMA36_Wnt6_Only Wnt_Occupancy 87768 475184 33369 0.014162 0.000480 0.008781 EMA36_Wnt7A_Only Wnt_Occupancy 989377 280106 283193 0.010719 0.000054 0.000088 EMA36_Wnt7B_Only Wnt_Occupancy 266780 479320 118895 0.000945 0.000227 0.003019 EMA36_Wnt8B_Only Wnt_Occupancy 4009 26867 10870 0.000000 0.000000 0.000000 EMA36_Wnt9B_Only Wnt_Occupancy 27254 13152 105947 0.000514 0.000000 0.004606 branchial_arches Wnt_HighOccupancy 34379 17199 13177 0.000000 0.000000 0.000000 dorsal_telencephalon Wnt_HighOccupancy 3674 2593 99411 0.000000 0.000000 0.000000 midbrain_dorsal Wnt_HighOccupancy 21286 71907 136367 0.000000 0.000000 0.000000 WntOccDomain_t00E Wnt_Occupancy 2714185 6587111 4248907 0.000557 0.000381 0.003809 WntOccDomain_t01E Wnt_Occupancy 2512422 5068341 3621535 0.005123 0.006171 0.005033 WntOccDomain_t02E Wnt_Occupancy 1694536 1995929 2507850 0.006785 0.002177 0.004843 WntOccDomain_t03E Wnt_Occupancy 815604 546615 1793336 0.006699 0.003255 0.004102 WntOccDomain_t04E Wnt_Occupancy 307701 137604 1113628 0.007972 0.002711 0.003482 WntOccDomain_t05E Wnt_Occupancy 106234 45804 592947 0.009780 0.001201 0.002101 WntOccDomain_t06E Wnt_Occupancy 34790 18887 321128 0.007243 0.000318 0.001380 WntOccDomain_t07E Wnt_Occupancy 8205 6464 177343 0.004509 0.000000 0.000823 WntOccDomain_t08E Wnt_Occupancy 1397 1823 94949 0.000000 0.000000 0.000569 WntOccDomain_t09E Wnt_Occupancy 227 456 51290 0.000000 0.000000 0.000273 WntOccDomain_t10E Wnt_Occupancy 41 85 29048 0.000000 0.000000 0.000138 ROHO_01_base_of_hindlimb Wnt_ROHO 518 3653 7023 0.000000 0.000000 0.000000 ROHO_02_branchial_arches Wnt_ROHO 34379 17199 13177 0.000000 0.000000 0.000000 ROHO_03_forelimb Wnt_ROHO 15788 12032 1234 0.072080 0.016955 0.152350 ROHO_04_dorsal_diecephalon Wnt_ROHO 6820 13662 101749 0.000000 0.000000 0.000000 ROHO_05_dorsal_neural_tube Wnt_ROHO 19857 5770 54115 0.000000 0.000000 0.000000 ROHO_06_dorsal_telencephalon Wnt_ROHO 3674 2593 99411 0.000000 0.000000 0.000000 ROHO_07_hindgut Wnt_ROHO 468 752 698 0.000000 0.000000 0.000000 ROHO_08_metencephalon Wnt_ROHO 2376 3257 1922 0.000000 0.000000 0.000000 ROHO_09_midbrain_dorsal Wnt_ROHO 21286 71907 136367 0.000000 0.000000 0.000000 ROHO_10_tailbud Wnt_ROHO 10177 9539 2278 0.000000 0.000000 0.000000 ROHO_11_cepahlic_flexure Wnt_ROHO 159 357 385 0.000000 0.000000 0.000000 ROHO_12_cortical_hem Wnt_ROHO 157 203 285 0.000000 0.000000 0.000000 ROHO_13_distal_hindlimb Wnt_ROHO 2273 6703 16104 0.000000 0.000000 0.000000 ROHO_14_diencephalon_floorplate Wnt_ROHO 11662 59255 17524 0.000000 0.000000 0.000000 ROHO_15_forelimb_neck Wnt_ROHO 3003 3077 6805 0.000000 0.000000 0.000000 ROHO_16_posterior_neural_tube Wnt_ROHO 1607 2856 330 0.000000 0.000000 0.000000 ROHO_17_fronto_nasal Wnt_ROHO 538 3854 3450 0.000000 0.000000 0.000000 ROHO_18_eye Wnt_ROHO 261 406 321 0.000000 0.000000 0.000000 ROHO_19_interlimb_flank Wnt_ROHO 6941 12547 10593 0.000000 0.000000 0.000000