Anatomy Intersect Analysis of analysis and expression data domains mapped to a common spatial model The intersection volumes calculated for each stage are normalised by the expression volume i.e row normalised Anatomy EMA36_neural_tube EMA53_neural_tube EMA118_neural_tube Name neural_tube neural tube neural tube Comment neural tube neural tube Stage ts15 ts17 ts19 Model EMA:36 EMA:53 EMA:118 Volume 684427 1285604 895693 Anatomy dir AnatomyDomains Exp data dir ExpressionData Roho dir ROHO_Domains Working dir /Users/richard/Projects/Wnt3DAnalysis/3D_DomainAnalysis Date & Time Mon 12 Jun 2017 19:18:31 BST Name Type EMA:36 Vol EMA:53 Vol EMA:118 Vol EMA:36 Anatomy Intersect Vol EMA:53 Anatomy Intersect Vol EMA:118 Anatomy Intersect Vol diencephalon Anatomy 222695 543756 369524 0.000000 0.000000 0.000000 diencephalon_floorplate Anatomy 11662 59255 17524 0.000000 0.000000 0.000000 embryo Anatomy 8195342 14409122 14566780 0.083514 0.089222 0.061489 eye Anatomy 75652 56705 58829 0.000000 0.000000 0.000000 forelimb_bud_left Anatomy 79116 256888 260263 0.000000 0.000000 0.000000 forelimb_bud_left_aer Anatomy 3323 9697 4911 0.000000 0.000000 0.000000 forelimb_bud_left_pz_distal Anatomy 24183 26687 18455 0.000000 0.000000 0.000000 forelimb_bud_left_anterior Anatomy 10770 44917 27972 0.000000 0.000000 0.000000 forelimb_bud_left_posterior Anatomy 8225 44549 31299 0.000000 0.000000 0.000000 forelimb_bud_left_proximal Anatomy 32621 76404 56381 0.000000 0.000000 0.000000 forelimb_bud_right Anatomy 82967 228175 223483 0.000000 0.000000 0.000000 forelimb_bud_right_aer Anatomy 1640 12095 4474 0.000000 0.000000 0.000000 forelimb_bud_right_pz_distal Anatomy 25410 40722 21236 0.000000 0.000000 0.000000 forelimb_bud_right_anterior Anatomy 8556 31434 30014 0.000000 0.000000 0.000000 forelimb_bud_right_posterior Anatomy 12235 46007 42494 0.000000 0.000000 0.000000 forelimb_bud_right_proximal Anatomy 35126 40343 59696 0.000000 0.000000 0.000000 heart Anatomy 580989 838272 538400 0.000000 0.000000 0.000000 hyoid_arch Anatomy 95101 163744 138545 0.000000 0.000000 0.000000 liver Anatomy 22096 88757 271927 0.000000 0.000000 0.000000 mandibular_arch Anatomy 176876 362151 556918 0.000000 0.000000 0.000000 maxillary_process Anatomy 188595 264736 266405 0.000000 0.000000 0.000000 mesencephalon Anatomy 196553 368645 342981 0.000000 0.000000 0.000000 hindbrain Anatomy 403580 857645 860924 0.000000 0.000000 0.000000 neural_tube Anatomy 684427 1285604 895693 1.000000 1.000000 1.000000 olfactory_placode Anatomy 38900 596878 425728 0.000000 0.000000 0.000000 otic_pit Anatomy 46290 65830 63379 0.000000 0.000000 0.000000 rathkes_pouch Anatomy 3930 13613 11868 0.000000 0.000000 0.000000 tail_bud Anatomy 85902 100011 68754 0.000000 0.000000 0.000000 telencephalon Anatomy 190477 419203 475856 0.000000 0.000000 0.000000 Fzd1 Fzd 55717 515619 1669960 0.053610 0.002537 0.009577 Fzd10 Fzd 361155 3644620 2309825 0.275079 0.174297 0.114269 Fzd3 Fzd 1452829 3793904 4266743 0.262167 0.189857 0.177862 Fzd4 Fzd 220653 157650 1002988 0.003734 0.005214 0.000382 Fzd6 Fzd 467530 3228769 5599048 0.093688 0.146504 0.106164 Fzd7 Fzd 1317077 2263985 1958064 0.173207 0.127655 0.059867 Fzd8 Fzd 1878738 2742695 3709042 0.072495 0.118211 0.040176 Fzd9 Fzd 509261 327569 997392 0.068582 0.002509 0.056807 Wnt1 Wnt 149998 154892 249188 0.135488 0.282539 0.122887 Wnt10A Wnt 39337 413643 201041 0.108219 0.020261 0.039092 Wnt10B Wnt 1113937 51179 344482 0.143707 0.009516 0.024936 Wnt11 Wnt 144790 3196672 845164 0.012301 0.056603 0.019699 Wnt16 Wnt 494292 463013 2294990 0.120734 0.027597 0.003666 Wnt2 Wnt 407998 981554 1651397 0.000025 0.000436 0.000163 Wnt2B Wnt 94349 51084 1791285 0.052783 0.004287 0.129500 Wnt3 Wnt 268085 1028642 800829 0.095943 0.272126 0.084246 Wnt3A Wnt 577919 377281 2064596 0.146065 0.165473 0.053350 Wnt4 Wnt 695384 592591 2283324 0.116225 0.399772 0.176720 Wnt5A Wnt 1028283 429701 2886105 0.074624 0.014198 0.017820 Wnt5B Wnt 186671 17485 1617412 0.018503 0.005262 0.041825 Wnt6 Wnt 507024 1236140 381346 0.018544 0.033692 0.004660 Wnt7A Wnt 2913315 884601 2176434 0.175735 0.366766 0.252935 Wnt7B Wnt 1526898 1173183 2252902 0.097175 0.348904 0.209514 Wnt8A Wnt 0 143251 1951749 0.000000 0.009110 0.069223 Wnt8B Wnt 44253 108590 289876 0.007028 0.000368 0.000238 Wnt9A Wnt 0 271095 1332618 0.000000 0.003301 0.011351 Wnt9B Wnt 197551 83024 867257 0.027608 0.004059 0.006896 EMA36_Fzd10_Only Fzd_Occupancy 63980 482924 303671 0.166349 0.075443 0.017835 EMA36_Fzd1_Only Fzd_Occupancy 15756 235708 56455 0.030592 0.002944 0.000762 EMA36_Fzd3_Only Fzd_Occupancy 549937 905757 412051 0.300363 0.162556 0.139830 EMA36_Fzd4_Only Fzd_Occupancy 87709 17141 272362 0.001551 0.005192 0.000015 EMA36_Fzd6_Only Fzd_Occupancy 152788 327728 1123999 0.032018 0.054878 0.015487 EMA36_Fzd7_Only Fzd_Occupancy 505949 284715 137533 0.124803 0.215363 0.000065 EMA36_Fzd8_Only Fzd_Occupancy 828387 302446 559400 0.038186 0.025079 0.012581 EMA36_Fzd9_Only Fzd_Occupancy 175338 63176 25639 0.023326 0.008737 0.000585 FzdOccDomain_t00E Fzd_Occupancy 4152222 7069763 5347834 0.030415 0.047505 0.016152 FzdOccDomain_t01E Fzd_Occupancy 2379844 2773096 2969676 0.117739 0.098340 0.029580 FzdOccDomain_t02E Fzd_Occupancy 1199803 1784412 2585286 0.169710 0.114805 0.156046 FzdOccDomain_t03E Fzd_Occupancy 378572 1254946 1809661 0.157291 0.149890 0.125331 FzdOccDomain_t04E Fzd_Occupancy 77031 960485 1010957 0.167984 0.228919 0.073285 FzdOccDomain_t05E Fzd_Occupancy 7554 433889 577643 0.230871 0.146915 0.027437 FzdOccDomain_t06E Fzd_Occupancy 312 106791 218711 0.288462 0.004326 0.005766 FzdOccDomain_t07E Fzd_Occupancy 4 24686 43348 0.000000 0.000122 0.000992 Tcf_GFP Readout 1401041 2166894 3228445 0.205224 0.193660 0.115618 EMA36_Wnt10A_Only Wnt_Occupancy 4683 136753 8811 0.002776 0.009799 0.001021 EMA36_Wnt10B_Only Wnt_Occupancy 286167 6904 36780 0.048007 0.019409 0.000462 EMA36_Wnt11_Only Wnt_Occupancy 40002 2015976 82567 0.006125 0.038676 0.029237 EMA36_Wnt16_Only Wnt_Occupancy 152532 241261 268566 0.029797 0.028877 0.009186 EMA36_Wnt1_Only Wnt_Occupancy 17200 43648 16444 0.111744 0.146673 0.003223 EMA36_Wnt2B_Only Wnt_Occupancy 11719 3725 303614 0.061439 0.031141 0.114685 EMA36_Wnt2_Only Wnt_Occupancy 199622 532513 615415 0.000030 0.000295 0.000206 EMA36_Wnt3A_Only Wnt_Occupancy 60258 87316 261548 0.079309 0.195256 0.005880 EMA36_Wnt3_Only Wnt_Occupancy 29896 308358 21632 0.055091 0.256215 0.001017 EMA36_Wnt4_Only Wnt_Occupancy 135183 148959 130634 0.036920 0.375506 0.006690 EMA36_Wnt5A_Only Wnt_Occupancy 178991 135138 399947 0.017772 0.027254 0.000875 EMA36_Wnt5B_Only Wnt_Occupancy 20981 3755 595272 0.042324 0.002397 0.054419 EMA36_Wnt6_Only Wnt_Occupancy 87768 475184 33369 0.004808 0.022621 0.000210 EMA36_Wnt7A_Only Wnt_Occupancy 989377 280106 283193 0.178115 0.271758 0.291423 EMA36_Wnt7B_Only Wnt_Occupancy 266780 479320 118895 0.029886 0.215073 0.030548 EMA36_Wnt8B_Only Wnt_Occupancy 4009 26867 10870 0.000249 0.000000 0.000736 EMA36_Wnt9B_Only Wnt_Occupancy 27254 13152 105947 0.001541 0.000380 0.020907 branchial_arches Wnt_HighOccupancy 34379 17199 13177 0.000000 0.000000 0.000000 dorsal_telencephalon Wnt_HighOccupancy 3674 2593 99411 0.000000 0.000000 0.000000 midbrain_dorsal Wnt_HighOccupancy 21286 71907 136367 0.000000 0.000000 0.000000 WntOccDomain_t00E Wnt_Occupancy 2714185 6587111 4248907 0.035412 0.051048 0.034943 WntOccDomain_t01E Wnt_Occupancy 2512422 5068341 3621535 0.088097 0.086679 0.046839 WntOccDomain_t02E Wnt_Occupancy 1694536 1995929 2507850 0.115040 0.189489 0.062627 WntOccDomain_t03E Wnt_Occupancy 815604 546615 1793336 0.147391 0.208200 0.102944 WntOccDomain_t04E Wnt_Occupancy 307701 137604 1113628 0.124946 0.122300 0.109660 WntOccDomain_t05E Wnt_Occupancy 106234 45804 592947 0.083420 0.024736 0.097886 WntOccDomain_t06E Wnt_Occupancy 34790 18887 321128 0.110377 0.002594 0.098213 WntOccDomain_t07E Wnt_Occupancy 8205 6464 177343 0.075442 0.000309 0.089392 WntOccDomain_t08E Wnt_Occupancy 1397 1823 94949 0.040086 0.000000 0.071533 WntOccDomain_t09E Wnt_Occupancy 227 456 51290 0.000000 0.000000 0.027686 WntOccDomain_t10E Wnt_Occupancy 41 85 29048 0.000000 0.000000 0.005233 ROHO_01_base_of_hindlimb Wnt_ROHO 518 3653 7023 0.000000 0.000000 0.000000 ROHO_02_branchial_arches Wnt_ROHO 34379 17199 13177 0.000000 0.000000 0.000000 ROHO_03_forelimb Wnt_ROHO 15788 12032 1234 0.000000 0.000000 0.000000 ROHO_04_dorsal_diecephalon Wnt_ROHO 6820 13662 101749 0.000000 0.000000 0.000000 ROHO_05_dorsal_neural_tube Wnt_ROHO 19857 5770 54115 0.580803 0.996360 1.000000 ROHO_06_dorsal_telencephalon Wnt_ROHO 3674 2593 99411 0.000000 0.000000 0.000000 ROHO_07_hindgut Wnt_ROHO 468 752 698 0.000000 0.000000 0.000000 ROHO_08_metencephalon Wnt_ROHO 2376 3257 1922 0.000000 0.000000 0.000000 ROHO_09_midbrain_dorsal Wnt_ROHO 21286 71907 136367 0.000000 0.000000 0.000000 ROHO_10_tailbud Wnt_ROHO 10177 9539 2278 0.000000 0.018451 0.000000 ROHO_11_cepahlic_flexure Wnt_ROHO 159 357 385 0.000000 0.000000 0.000000 ROHO_12_cortical_hem Wnt_ROHO 157 203 285 0.000000 0.000000 0.000000 ROHO_13_distal_hindlimb Wnt_ROHO 2273 6703 16104 0.000000 0.000000 0.000000 ROHO_14_diencephalon_floorplate Wnt_ROHO 11662 59255 17524 0.000000 0.000000 0.000000 ROHO_15_forelimb_neck Wnt_ROHO 3003 3077 6805 0.000000 0.000000 0.000000 ROHO_16_posterior_neural_tube Wnt_ROHO 1607 2856 330 0.473553 0.815826 0.000000 ROHO_17_fronto_nasal Wnt_ROHO 538 3854 3450 0.000000 0.000000 0.000000 ROHO_18_eye Wnt_ROHO 261 406 321 0.000000 0.000000 0.000000 ROHO_19_interlimb_flank Wnt_ROHO 6941 12547 10593 0.000000 0.000000 0.000000