WlzPatchObjRegister.c File Reference

Registers patch objects and outputs a single object. More...

Data Structures
struct	_patchTree

Typedefs
typedef struct _patchTree	WlzPatchTree

Functions
int	WlzIsAdjacentPatch (WlzObject *obj1, WlzObject *obj2)
int	sortPatch (const void *p1, const void *p2)
WlzPatchTree *	WlzMakePatchTree (WlzObject *obj, int depth, double cost)
WlzErrorNum	WlzGetPatchTreeToDepth (WlzObject **objs, int nobjs, WlzPatchTree *patchTree, int depth)
WlzPatchTree *	WlzGetPatchTree (WlzObject *obj, WlzObject **objs, int nobjs)
WlzErrorNum	WlzFreePatchTree (WlzPatchTree *patchTree)
double	WlzMass (WlzObject *obj, WlzErrorNum *dstErr)
WlzObject *	WlzGreyShift (WlzObject *obj, double delta, WlzErrorNum *dstErr)
WlzObject *	WlzGreyScale (WlzObject *obj, double scale, WlzErrorNum *dstErr)
WlzObject *	WlzRGBAGreyScale (WlzObject *obj, double *scale, WlzErrorNum *dstErr)
double	WlzGreyMeanDifference (WlzObject *obj1, WlzObject *obj2, double samplePercent, WlzErrorNum *dstErr)
WlzErrorNum	DumbRegMatch (WlzDVertex2 *shift, double *matchVal, WlzObject *obj1, WlzObject *obj2, WlzIVertex2 maxShift)
WlzPatchTree *	WlzPatchTreeUnalignedChild (WlzPatchTree *patchTree, int depth, WlzDVertex2 *shift)
int	WlzPatchMaxDepth (WlzPatchTree *patchTree)
WlzErrorNum	WlzRegisterPatchTreeBF (WlzPatchTree *patchTree)
WlzErrorNum	WlzRegisterPatchTreeDF (WlzPatchTree *patchTree)
WlzObject *	WlzPatchTreeToObject (WlzPatchTree *patchTree, int alignGreysFlg)
int	WlzPatchHitBuffers (WlzPatchTree *patchTree)
WlzErrorNum	WlzPrintPatchTree (WlzPatchTree *patchTree, FILE *fp, int depth)
WlzErrorNum	WlzPatchFacts (WlzPatchTree *patchTree, FILE *fp, char **dstStr, int verbose)
int	main (int argc, char **argv)

Detailed Description

Registers patch objects and outputs a single object.

Author

Richard Baldock

Date

February 1998

Version

Id

e6b912587de420c9f6572f139377b96ea50364b6

Address: MRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Western General Hospital, Edinburgh, EH4 2XU, UK.

Copyright (C), [2012], The University Court of the University of Edinburgh, Old College, Edinburgh, UK.

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.

Binary

WlzPatchObjRegister

Typedef Documentation

typedef struct _patchTree WlzPatchTree

Function Documentation

int WlzIsAdjacentPatch	(	WlzObject *	obj1,
		WlzObject *	obj2
	)

References _WlzObject::domain, _WlzDomain::i, _WlzIntervalDomain::kol1, _WlzIntervalDomain::lastkl, _WlzIntervalDomain::lastln, and _WlzIntervalDomain::line1.

Referenced by WlzGetPatchTree(), and WlzGetPatchTreeToDepth().

int sortPatch	(	const void *	p1,
		const void *	p2
	)

References _patchTree::cost.

Referenced by WlzGetPatchTreeToDepth().

WlzPatchTree* WlzMakePatchTree	(	WlzObject *	obj,
		int	depth,
		double	cost
	)

References AlcCalloc(), _patchTree::cost, _patchTree::depth, _patchTree::obj, and WlzAssignObject().

Referenced by main(), and WlzGetPatchTreeToDepth().

WlzErrorNum WlzGetPatchTreeToDepth	(	WlzObject **	objs,
		int	nobjs,
		WlzPatchTree *	patchTree,
		int	depth
	)

References AlgSort(), _patchTree::children, _patchTree::depth, _patchTree::index, _patchTree::nchildren, _patchTree::obj, sortPatch(), WLZ_ERR_NONE, WLZ_GREY_RGBA, WlzFreeObj(), WlzGreyStats(), WlzGreyTypeFromObj(), WlzIsAdjacentPatch(), WlzMakePatchTree(), and WlzRGBAToModulus().

Referenced by main().

WlzPatchTree* WlzGetPatchTree	(	WlzObject *	obj,
		WlzObject **	objs,
		int	nobjs
	)

References AlcCalloc(), _patchTree::children, _patchTree::nchildren, _patchTree::obj, _patchTree::offsetsCalculatedFlag, WlzAssignObject(), WlzFreeObj(), and WlzIsAdjacentPatch().

Referenced by main().

WlzErrorNum WlzFreePatchTree

(

WlzPatchTree *

patchTree

)

References AlcFree(), _patchTree::children, _patchTree::nchildren, _patchTree::obj, WLZ_ERR_NONE, and WlzFreeObj().

Referenced by main().

double WlzMass	(	WlzObject *	obj,
		WlzErrorNum *	dstErr
	)

References _WlzIntervalWSpace::colrmn, _WlzDomain::core, _WlzGreyP::dbp, _WlzObject::domain, _WlzGreyP::flp, _WlzGreyP::inp, _WlzGreyWSpace::pixeltype, _WlzGreyP::shp, _WlzObject::type, _WlzGreyWSpace::u_grintptr, _WlzGreyP::ubp, WLZ_2D_DOMAINOBJ, WLZ_EMPTY_OBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_EOO, WLZ_ERR_GREY_TYPE, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_GREY_DOUBLE, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WlzInitGreyScan(), and WlzNextGreyInterval().

WlzObject* WlzGreyShift	(	WlzObject *	obj,
		double	delta,
		WlzErrorNum *	dstErr
	)

References _WlzIntervalWSpace::colrmn, _WlzValues::core, _WlzDomain::core, _WlzGreyP::dbp, _WlzObject::domain, _WlzGreyP::flp, _WlzGreyP::inp, _WlzGreyWSpace::pixeltype, _WlzGreyP::shp, _WlzObject::type, _WlzCoreDomain::type, _WlzGreyWSpace::u_grintptr, _WlzGreyP::ubp, _WlzObject::values, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_CLAMP, WLZ_EMPTY_DOMAIN, WLZ_EMPTY_OBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_EOO, WLZ_ERR_GREY_TYPE, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_VALUES_NULL, WLZ_GREY_DOUBLE, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WLZ_TRANS_OBJ, WlzCopyObject(), WlzFreeObj(), WlzInitGreyScan(), WlzMakeEmpty(), and WlzNextGreyInterval().

WlzObject* WlzGreyScale	(	WlzObject *	obj,
		double	scale,
		WlzErrorNum *	dstErr
	)

References _WlzIntervalWSpace::colrmn, _WlzValues::core, _WlzDomain::core, _WlzGreyP::dbp, _WlzObject::domain, _WlzGreyP::flp, _WlzGreyP::inp, _WlzGreyWSpace::pixeltype, _WlzGreyP::shp, _WlzObject::type, _WlzCoreDomain::type, _WlzGreyWSpace::u_grintptr, _WlzGreyP::ubp, _WlzObject::values, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_CLAMP, WLZ_EMPTY_DOMAIN, WLZ_EMPTY_OBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_EOO, WLZ_ERR_GREY_TYPE, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_VALUES_NULL, WLZ_GREY_DOUBLE, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WLZ_TRANS_OBJ, WlzCopyObject(), WlzFreeObj(), WlzInitGreyScan(), WlzMakeEmpty(), and WlzNextGreyInterval().

Referenced by WlzPatchTreeToObject(), and WlzRGBAGreyScale().

WlzObject* WlzRGBAGreyScale	(	WlzObject *	obj,
		double *	scale,
		WlzErrorNum *	dstErr
	)

References _WlzCompoundArray::o, _WlzObject::type, WLZ_2D_DOMAINOBJ, WLZ_COMPOUND_ARR_1, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_VALUES_TYPE, WLZ_GREY_RGBA, WLZ_RGBA_SPACE_RGB, WlzCompoundToRGBA(), WlzFreeObj(), WlzGreyScale(), WlzGreyTypeFromObj(), WlzMakeCompoundArray(), and WlzRGBAToCompound().

Referenced by WlzPatchTreeToObject().

double WlzGreyMeanDifference	(	WlzObject *	obj1,
		WlzObject *	obj2,
		double	samplePercent,
		WlzErrorNum *	dstErr
	)

References _WlzIntervalWSpace::colrmn, _WlzGreyP::dbp, _WlzObject::domain, _WlzGreyP::flp, _WlzGreyP::inp, _WlzGreyWSpace::pixeltype, _WlzGreyP::rgbp, _WlzGreyP::shp, _WlzObject::type, _WlzGreyWSpace::u_grintptr, _WlzGreyP::ubp, _WlzObject::values, WLZ_ERR_GREY_TYPE, WLZ_ERR_NONE, WLZ_GREY_DOUBLE, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_RGBA, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WLZ_RGBA_BLUE_GET, WLZ_RGBA_GREEN_GET, WLZ_RGBA_RED_GET, WlzAssignValues(), WlzFreeObj(), WlzInitGreyScan(), WlzIntersect2(), WlzMakeMain(), and WlzNextGreyInterval().

Referenced by DumbRegMatch().

WlzErrorNum DumbRegMatch	(	WlzDVertex2 *	shift,
		double *	matchVal,
		WlzObject *	obj1,
		WlzObject *	obj2,
		WlzIVertex2	maxShift
	)

References _WlzIVertex2::vtX, _WlzDVertex2::vtX, _WlzIVertex2::vtY, _WlzDVertex2::vtY, WLZ_ERR_NONE, WlzFreeObj(), WlzGreyMeanDifference(), and WlzShiftObject().

Referenced by WlzRegisterPatchTreeBF(), and WlzRegisterPatchTreeDF().

WlzPatchTree* WlzPatchTreeUnalignedChild	(	WlzPatchTree *	patchTree,
		int	depth,
		WlzDVertex2 *	shift
	)

References _patchTree::children, _patchTree::depth, _patchTree::nchildren, _patchTree::offsetsCalculatedFlag, _WlzDVertex2::vtX, _WlzDVertex2::vtY, _patchTree::xOff, and _patchTree::yOff.

Referenced by WlzRegisterPatchTreeBF().

int WlzPatchMaxDepth

(

WlzPatchTree *

patchTree

)

References _patchTree::children, _patchTree::depth, and _patchTree::nchildren.

Referenced by WlzRegisterPatchTreeBF().

WlzErrorNum WlzRegisterPatchTreeBF

(

WlzPatchTree *

patchTree

)

References _patchTree::depth, DumbRegMatch(), _patchTree::obj, _patchTree::offsetsCalculatedFlag, _WlzIVertex2::vtX, _WlzDVertex2::vtX, _WlzIVertex2::vtY, _WlzDVertex2::vtY, WLZ_ERR_NONE, WlzAssignObject(), WlzFreeObj(), WlzPatchMaxDepth(), WlzPatchTreeUnalignedChild(), WlzShiftObject(), WlzUnionN(), _patchTree::xOff, and _patchTree::yOff.

Referenced by main().

WlzErrorNum WlzRegisterPatchTreeDF

(

WlzPatchTree *

patchTree

)

References _patchTree::children, _WlzObject::domain, DumbRegMatch(), _WlzDomain::i, _patchTree::nchildren, _patchTree::obj, _patchTree::offsetsCalculatedFlag, _WlzIVertex2::vtX, _WlzDVertex2::vtX, _WlzIVertex2::vtY, _WlzDVertex2::vtY, WLZ_ERR_NONE, WlzStandardIntervalDomain(), _patchTree::xOff, and _patchTree::yOff.

Referenced by main().

WlzObject* WlzPatchTreeToObject	(	WlzPatchTree *	patchTree,
		int	alignGreysFlg
	)

References _patchTree::children, _WlzValues::core, _WlzObject::domain, _patchTree::nchildren, _patchTree::obj, _WlzObject::type, _WlzObject::values, WLZ_GREY_RGBA, WLZ_RGBA_SPACE_RGB, WlzAssignObject(), WlzDiffDomain(), WlzFreeObj(), WlzGreyScale(), WlzGreyStats(), WlzGreyTypeFromObj(), WlzIntersect2(), WlzMakeMain(), WlzRGBAGreyScale(), WlzRGBAGreyStats(), WlzShiftObject(), WlzUnionN(), _patchTree::xOff, and _patchTree::yOff.

Referenced by main().

int WlzPatchHitBuffers

(

WlzPatchTree *

patchTree

)

References _patchTree::children, _patchTree::nchildren, _WlzIVertex2::vtX, _WlzIVertex2::vtY, _patchTree::xOff, and _patchTree::yOff.

Referenced by main().

WlzErrorNum WlzPrintPatchTree	(	WlzPatchTree *	patchTree,
		FILE *	fp,
		int	depth
	)

References AlcMalloc(), _patchTree::children, _patchTree::cost, _patchTree::depth, _patchTree::index, _patchTree::nchildren, and WLZ_ERR_NONE.

Referenced by main().

WlzErrorNum WlzPatchFacts	(	WlzPatchTree *	patchTree,
		FILE *	fp,
		char **	dstStr,
		int	verbose
	)

References _patchTree::children, _patchTree::index, _patchTree::nchildren, _patchTree::obj, _patchTree::offsetsCalculatedFlag, WLZ_ERR_NONE, WlzObjectFacts(), _patchTree::xOff, and _patchTree::yOff.

Referenced by main().

int main	(	int	argc,
		char **	argv
	)

References AlcFree(), AlcMalloc(), _patchTree::depth, getopt(), _patchTree::index, _WlzGreyV::inv, _WlzCompoundArray::n, _WlzCompoundArray::o, _patchTree::obj, optarg, opterr, optind, _WlzPixelV::type, _WlzObject::type, _WlzPixelV::v, _WlzIVertex2::vtX, _WlzIVertex2::vtY, WLZ_COMPOUND_ARR_1, WLZ_COMPOUND_ARR_2, WLZ_ERR_NONE, WLZ_ERR_READ_EOF, WLZ_ERR_UNSPECIFIED, WLZ_GREY_INT, WLZ_GREY_RGBA, WLZ_THRESH_HIGH, WlzAssignObject(), WlzFreeObj(), WlzFreePatchTree(), WlzGetPatchTree(), WlzGetPatchTreeToDepth(), WlzGreyStats(), WlzGreyTypeFromObj(), WlzMakeEmpty(), WlzMakePatchTree(), WlzPatchFacts(), WlzPatchHitBuffers(), WlzPatchTreeToObject(), WlzPrintPatchTree(), WlzReadObj(), WlzRegisterPatchTreeBF(), WlzRegisterPatchTreeDF(), WlzRGBAToModulus(), WlzThreshold(), and WlzWriteObj().